View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17788_low_9 (Length: 280)

Name: NF17788_low_9
Description: NF17788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17788_low_9
NF17788_low_9
[»] chr2 (4 HSPs)
chr2 (48-262)||(37536045-37536259)
chr2 (72-155)||(35453239-35453322)
chr2 (128-203)||(19572563-19572638)
chr2 (128-206)||(43050106-43050184)
[»] chr3 (2 HSPs)
chr3 (86-159)||(22318226-22318299)
chr3 (86-203)||(43726564-43726681)
[»] chr4 (4 HSPs)
chr4 (86-186)||(45195754-45195854)
chr4 (86-160)||(33086896-33086970)
chr4 (54-140)||(3322229-3322315)
chr4 (121-203)||(26988979-26989061)
[»] chr8 (2 HSPs)
chr8 (48-159)||(37325123-37325234)
chr8 (121-160)||(41868175-41868214)
[»] chr6 (2 HSPs)
chr6 (128-197)||(10242568-10242637)
chr6 (139-203)||(32982100-32982164)
[»] chr7 (1 HSPs)
chr7 (86-160)||(4451859-4451933)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 37536045 - 37536259
Alignment:
Q  48 ccatcctattgatttctcgcgcgctatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37536045 ccatcctattgatttctcgcgcgctatatacaatacatattatataatctgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttc 37536144  T
Q  148 gaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatgtcaaaaaataaccataacggatgtagtaaaaccctacattatac 247  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  37536145 gaattttaaaatcaaaataaagcgcgcgagaacctcataaggtgacaaaagtaatgccaaaaaataaccataacggatggagtaaaaccctacattatac 37536244  T
Q  248 atatgaacatggata 262  Q
    |||||||||||||||    
T  37536245 atatgaacatggata 37536259  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 35453322 - 35453239
Alignment:
Q  72 tatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaatttta 155  Q
    |||||||||| || ||||||||||||||||| |||||| |||   ||| ||||| ||||| || ||||||||||||||||||||    
T  35453322 tatatacaattcagattatataatttgaatgtcataaatatcctataaaaacctgtaaaatatattaaaacatttcgaatttta 35453239  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 19572638 - 19572563
Alignment:
Q  128 aaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatg 203  Q
    |||||| |||||||||||||  ||||||||||| |||||  || ||| |||| |||| ||||||| ||||||||||    
T  19572638 aaaacacgttaaaacatttcagattttaaaatccaaatatggcacgccagaaactcacaaggtgaaaaaagtaatg 19572563  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 43050184 - 43050106
Alignment:
Q  128 aaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatgtca 206  Q
    |||||| ||| |||||||||  |||||||||||  ||||| ||| || |||| |||||| |||| ||||||||||||||    
T  43050184 aaaacacgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaaactcatagggtgggaaaagtaatgtca 43050106  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 22318299 - 22318226
Alignment:
Q  86 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaat 159  Q
    |||||| |||| ||||  |||||||||||| ||| |||||| ||||||||||||||||||||  ||||||||||    
T  22318299 attatagaattcgaatagcataaacatctcataaaaaccttcaaaacatgttaaaacatttcatattttaaaat 22318226  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 43726681 - 43726564
Alignment:
Q  86 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcat 185  Q
    ||||||||||| |||  | ||||||| ||| | | ||||| ||||||||| ||||| |||||  ||||||||||   ||||  ||||||||||| |||||    
T  43726681 attatataattcgaactatataaacacctcatcaaaacctctaaaacatgataaaatatttctgattttaaaattctaatagggcgcgcgagaaactcat 43726582  T
Q  186 aaggtgagaaaagtaatg 203  Q
    ||||||  ||||||||||    
T  43726581 aaggtggaaaaagtaatg 43726564  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 45195754 - 45195854
Alignment:
Q  86 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcat 185  Q
    ||||||||||| ||| |||||||||||||  ||| || ||  |||| | ||||||||||||||||||||| |||  |||||| ||| ||||||| |||||    
T  45195754 attatataattcgaacgacataaacatcttataaaaatctccaaaatacgttaaaacatttcgaattttagaattcaaataaggcgtgcgagaaactcat 45195853  T
Q  186 a 186  Q
    |    
T  45195854 a 45195854  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 33086970 - 33086896
Alignment:
Q  86 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatc 160  Q
    ||||||||||| |||||||| ||||| | | ||| |  || ||||||| ||||||||||||||||||||||||||    
T  33086970 attatataattcgaatgacaaaaacaccccataaaaggctctaaaacacgttaaaacatttcgaattttaaaatc 33086896  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 3322229 - 3322315
Alignment:
Q  54 tattgatttctcgcgcgctatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaa 140  Q
    |||||||||||||| ||| ||||||| | |  || |||||||||||| || ||||||||||| ||| |||||  |||||| ||||||    
T  3322229 tattgatttctcgcacgccatatacagttctgatgatataatttgaacgatataaacatctcataaaaacctccaaaacacgttaaa 3322315  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 26988979 - 26989061
Alignment:
Q  121 aacctttaaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatg 203  Q
    |||||| |||||| |||||||||||||| |||||| |||| | |||  || ||| |||| |||||| |||| |||||||||||    
T  26988979 aaccttcaaaacacgttaaaacatttcggattttagaatctagatagggcacgcaagaaactcatagggtgggaaaagtaatg 26989061  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 37325234 - 37325123
Alignment:
Q  48 ccatcctattgatttctcgcgcgctatatacaatacatattatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttc 147  Q
    ||||| |||||||||||| ||||   ||| ||||  | |||||| ||||  ||||||||||||||| | | | |||||  |||||| |||||||||||||    
T  37325234 ccatcttattgatttctcacgcgtcctatgcaatttagattatagaattcaaatgacataaacatcccattaaaacctccaaaacacgttaaaacatttc 37325135  T
Q  148 gaattttaaaat 159  Q
    ||||||||||||    
T  37325134 gaattttaaaat 37325123  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 41868175 - 41868214
Alignment:
Q  121 aacctttaaaacatgttaaaacatttcgaattttaaaatc 160  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  41868175 aacctttaaaacatattaaaatatttcgaattttaaaatc 41868214  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 10242568 - 10242637
Alignment:
Q  128 aaaacatgttaaaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaa 197  Q
    |||||| |||||||||||||  |||||  |||| |||||| |||||||| || |||||||||||||||||    
T  10242568 aaaacacgttaaaacatttcagattttggaatccaaataaggcgcgcgaaaaactcataaggtgagaaaa 10242637  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 32982100 - 32982164
Alignment:
Q  139 aaacatttcgaattttaaaatcaaaataaagcgcgcgagaatctcataaggtgagaaaagtaatg 203  Q
    |||||||||| |||||||||||| |||| |||| || ||||  ||||||||||| ||||||||||    
T  32982100 aaacatttcgtattttaaaatcataatagagcgtgcaagaaattcataaggtgaaaaaagtaatg 32982164  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 4451933 - 4451859
Alignment:
Q  86 attatataatttgaatgacataaacatctcgtaagaacctttaaaacatgttaaaacatttcgaattttaaaatc 160  Q
    |||||||||| |||| |||||||| | | | ||| ||| |  |||||||||||||||||||| ||||||||||||    
T  4451933 attatataatctgaacgacataaataacccataaaaacttcaaaaacatgttaaaacatttcaaattttaaaatc 4451859  T

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