View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17789_high_1 (Length: 735)

Name: NF17789_high_1
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17789_high_1
NF17789_high_1
[»] chr3 (1 HSPs)
chr3 (20-725)||(394826-395531)


Alignment Details
Target: chr3 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 20 - 725
Target Start/End: Original strand, 394826 - 395531
Alignment:
Q  20 cgagtgatttagaaagtaacaagcatcaagtccataccagtattatcacaggtattctccatggcacaactgtcaaaaagttttctcttcttgtagaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  394826 cgagtgatttagaaagtaacaagcatcaagtccataccagtattatcacaggtattctccatggcacaactgtcaaaaagttttctcttcttgtagaaaa 394925  T
Q  120 gcaatccctcaccagatggattgggcaacatcggtggatgcatagcatagaaatttcccagagcagctgaaactgtttgaatgcagttcctttcatcatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  394926 gcaatccctcaccagatggattgggcaacatcggtggatgcatagcatagaaatttcccagagcagctgaaactgtttgaatgcagttcctttcatcatc 395025  T
Q  220 ccaatcaacctatcatcaaaatgcataccacaatgttcaacatcagaaggnnnnnnncgtgattggaaaaaattatgcatttcatcattatgaaaaggca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||| ||||||||    
T  395026 ccaatcaacctatcatcaaaatgcataccacaatgttcaacatgagaaggaaaaaaatgtgattggaaaaaattatgcatttcatcattatcaaaaggca 395125  T
Q  320 tccatttgaatgtttggtaggtaagcaattgaatggaataacaactagattagcgtaatgtttgctcccaaaaagtgtatccaaaatacagnnnnnnnnt 419  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  395126 tccatttgaatgtttagtaggtaagcaattgaatggaataataactagattagcgtaatgtttgctcccaaaaagtgtatccaaaatacagaaaaaaaat 395225  T
Q  420 gcagatagtatgacagtatttataactgtgtagcataaccgagttcaggttcaggcatcgtataaatagctgatttattaccagtgagtcagacatacac 519  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395226 gcagatagtatgacagtatttataattgtgtagcataaccgagttcaggttcaggcatcgtataaatagctgatttattaccagtgagtcagacatacac 395325  T
Q  520 agtagagaaaatataaaagaaattgctgagattaagagacggagaatggagagttttataactaacatcattccctaaactaagcacaaactcagggatg 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395326 agtagagaaaatataaaagaaattgctgagattaagagacggagaatggagagttttataactaacatcattccctaaactaagcacaaactcagggatg 395425  T
Q  620 cgatccatgtcaggagtatactggtcaagtatcacaggaagtctagagatatttccctgatcatcaatatgaatgccaaaatactcctccagcataccag 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395426 cgatccatgtcaggagtatactggtcaagtatcacaggaagtctagagatatttccctgatcatcaatatgaatgccaaaatactcctccagcataccag 395525  T
Q  720 cctttg 725  Q
    ||||||    
T  395526 cctttg 395531  T

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