View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17789_high_10 (Length: 259)
Name: NF17789_high_10
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 360425 - 360198
Alignment:
| Q |
16 |
agctatcaggtgattccaacatttccttatcgtattttattcatgatcaagtagtaagacttacgtgaatttcacttgatcataaatgagcgaattttaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
360425 |
agctatcaggtgattctaacatttccttatcgtattttattcatgatcaagtagtaagacttgcgtgaattttacttgatcataaatgagcgaattttaa |
360326 |
T |
|
| Q |
116 |
atcactatatatcatcaatgttaaaaaatatatttcataaggttatatgataataattggtttctttttgttcaaggttttcgcaatgccagtttttgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
360325 |
atcactatatatcatcaatgttaaaaaatatatttcataaggttatatgataataattggtttctttttgttcaaggttttcgcaatgccagtttttgat |
360226 |
T |
|
| Q |
216 |
acactcgagtcttgtttagtgcaaaagt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
360225 |
acactcgagtcttgtttagtgcaaaagt |
360198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University