View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_high_11 (Length: 253)
Name: NF17789_high_11
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27792689 - 27792928
Alignment:
| Q |
1 |
caaaattattacccatctccatgtgtatcacagtgattaacagattgcaagagcgatagactcctcagttcttactccaacgttaactatgactctatag |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27792689 |
caaaattattacccatctccatgcgtatcacattgattaacagattgcaagagcgatagactcctcagttcttactccaacgttaactatgactctatag |
27792788 |
T |
|
| Q |
101 |
agactatatgtcaaatcctaaataatatattcaacaaatttaagggatgcgacataaaagtgtggatagacgtactcaataaaagtcgatatatcatagt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27792789 |
agactatatgtcaaatcctaaataatatattcaacaaatttaagggatgcgacataaaagtgtggatagacgtactcaataaaagtcgatatatcatagt |
27792888 |
T |
|
| Q |
201 |
agaagtgtattagtttcccttattaacaccgccctttcct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
27792889 |
agaagtgtattagtttcccttattaacaccgccctttcct |
27792928 |
T |
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