View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17789_high_2 (Length: 570)
Name: NF17789_high_2
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Original strand, 35922435 - 35922990
Alignment:
| Q |
9 |
gtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagcttgactagc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922435 |
gtgttttcaatgcatctccctcttcccaagaaagtgtcttgggaggattctgagattttctagacagaataaactcattgagtttatcagcttgactagc |
35922534 |
T |
|
| Q |
109 |
tttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922535 |
tttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatc |
35922634 |
T |
|
| Q |
209 |
ataagtttctaactatttatagatgaaaaagtgacaattttgcaggacttatttggttgtgcttattggagtcatgtgaatgaaacaagtgttaacagca |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35922635 |
ataagtttctaacaatttatagatgaaaaagtgacaattttggaggacttatttggttgtgcttattggagtcatgtgaatgaaacaagtgttaacagta |
35922734 |
T |
|
| Q |
309 |
caattgaccaatgactatgcaatattgatcagccggctgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35922735 |
caattgaccaatgactatgcaatattgatcagccggctgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaataa |
35922834 |
T |
|
| Q |
409 |
tttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgtggtttatgcagtgtcttcattctagtttctaagagca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922835 |
tttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgtggtttatgcagtgtcttcattctagtttctaagagca |
35922934 |
T |
|
| Q |
509 |
tctgtaattgggttactgggaat------atgcttggtcgtgccaggttctatatg |
558 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35922935 |
tctgtaattgggttactgggaatatgctcatgcttgctcgtgccaggttctatatg |
35922990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 35911779 - 35912247
Alignment:
| Q |
9 |
gtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagcttgactagc |
108 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
35911779 |
gtgttttcaatgcatcttcctcttcccatgaaagagtcttaggaggattctgtgaggttctagacagaataaactcaacaagtttatcagcttgactagc |
35911878 |
T |
|
| Q |
109 |
tttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatc |
208 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
35911879 |
tttgcaatatggaaaaataaccaatagactcaagttgagtagtaaacaagcataaagagaaaccttcttcatcttgttctcaacttggcttcaatatatc |
35911978 |
T |
|
| Q |
209 |
ataagtttctaactatttatagatgaaaa--agtgacaattttgca-ggacttatttggttgtgcttattggagtcatgtgaatgaaaca--agtgttaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || || ||||||||| |||| | || ||||| |
|
|
| T |
35911979 |
ataagtttctaactatttatagatgaaaaacagtggcaattttgcagggacttatttggttgtgcttgtttgaatcatgtgaaagaaataagagagttaa |
35912078 |
T |
|
| Q |
304 |
cagcacaattgaccaatgactatgcaatattgatcagccggctga------atgtaagtgattttccttgtttccctttttctagaatcatggtatcaag |
397 |
Q |
| |
|
||| || |||||||||||| |||| |||| |||||||||||| | |||| |||| | ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
35912079 |
cagtactgttgaccaatgaccatgc---attggtcagccggctgaccgaccaggtaatggattgttcttgtttccgtttttctagaatcat-gtatcaag |
35912174 |
T |
|
| Q |
398 |
gtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgt |
471 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
35912175 |
ttatttaacattttagtactatgtgattaactttgaaagttaatg-gatgtttgttcctctaacttattgttgt |
35912247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 35916166 - 35916459
Alignment:
| Q |
9 |
gtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagcttgactagc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916166 |
gtgttttcaatgcatctccctcttcccaagaaagtgtcttaggaggattctgagattttctagacagaataaactcattgagtttatcagcttgactagc |
35916265 |
T |
|
| Q |
109 |
tttgctatatggaaaaataaccaaaag---gctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacat |
205 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35916266 |
tttgctatatggaaaaataaccaaaagactgatcaaattgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaatat |
35916365 |
T |
|
| Q |
206 |
atcataagtttctaactatttatagatgaaaa--agtgacaattttgcaggacttatttggttgtgcttattggagtcatgtgaatgaaacaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||||| |||||||| |||||||| |
|
|
| T |
35916366 |
atcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttcttgttggagccatgtgaaagaaacaag |
35916459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 35941292 - 35941491
Alignment:
| Q |
1 |
agaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35941292 |
agaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagacagaataaactcattgagtttatcagct |
35941391 |
T |
|
| Q |
101 |
tgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
35941392 |
tgactagctttgctatatggaaaaataaccaataaactcaagttgagtattaaacaagcataaagagaaaccttctccatcttgttctcaacttgatttc |
35941491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35935742 - 35935940
Alignment:
| Q |
1 |
agaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagct |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||| |||||||||||| |
|
|
| T |
35935742 |
agaagaaagtgttttcaatgcttctccctcttcccaagaaagagtcttgggaggattctgtgattttctagacagaaaaagctcatcaagtttatcagct |
35935841 |
T |
|
| Q |
101 |
tgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggttt |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
35935842 |
tgactagctttgctataaggaaaaataaccaagagactcaagttgagtaataaacaagcataaagagaaattttcttcatcttgttcttaagttggttt |
35935940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 35929116 - 35929329
Alignment:
| Q |
18 |
atgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagaaagaataaactcattgagtttatcagcttgactagctttgctata |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
35929116 |
atgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctata |
35929215 |
T |
|
| Q |
118 |
tggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatcataagtttc |
217 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| | |||||| |
|
|
| T |
35929216 |
tggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttcttcatcttattctcaacttggtttccatatatc-ttagtttc |
35929314 |
T |
|
| Q |
218 |
taactatttatagat |
232 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
35929315 |
tatctatttatagat |
35929329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 365 - 483
Target Start/End: Original strand, 35936130 - 35936245
Alignment:
| Q |
365 |
ttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaactta |
464 |
Q |
| |
|
|||||||||| ||| ||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
35936130 |
ttgtttccctgtttgtagaatcat---aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcctctaactta |
35936226 |
T |
|
| Q |
465 |
ttgttgtggtttatgcagt |
483 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
35936227 |
ttgttgtggttgatgcagt |
35936245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 346 - 481
Target Start/End: Original strand, 35929457 - 35929593
Alignment:
| Q |
346 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatg--- |
442 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
35929457 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
35929553 |
T |
|
| Q |
443 |
-atatatttgttcctctaacttattgttgtggtttatgca |
481 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
35929554 |
aatatattttgtcctctaacttattgttgccgtttatgca |
35929593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 483
Target Start/End: Original strand, 35941655 - 35941769
Alignment:
| Q |
364 |
cttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaactt |
463 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
35941655 |
cttgttttcctttttctagaatcatg-tatcaagttatttaacaatttagcactttgtaattaacttt----gttaattatatattttttcctctaactt |
35941749 |
T |
|
| Q |
464 |
attgttgtggtttatgcagt |
483 |
Q |
| |
|
||| || || || ||||||| |
|
|
| T |
35941750 |
atttttatgattgatgcagt |
35941769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 442
Target Start/End: Original strand, 35916550 - 35916641
Alignment:
| Q |
348 |
aatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatg |
442 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
35916550 |
aatgtaagggattgtcattgtttccctttttctagaatcat---atcaagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University