View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_high_3 (Length: 513)
Name: NF17789_high_3
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 21 - 502
Target Start/End: Original strand, 45705371 - 45705857
Alignment:
| Q |
21 |
gatcatatgcatctcttggatcgaaacaggtttccaatgtcgattgctgttgcagagaagataaaatatgatacaagttctacgtctgtgaataaaaaac |
120 |
Q |
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| T |
45705371 |
gatcatatgcatctcttggatcgaaacaggtttccaatgtcaattgctgttgcagagaagataaaatatgatacaagttctacgtctgtgaataaaaaac |
45705470 |
T |
|
| Q |
121 |
gtgaaccaagatctggtggaaagtttatacaatcttcacaaacatgcaatgaggtccaacgttcatgctacaagaccaacttcttcctccgagactaatt |
220 |
Q |
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| T |
45705471 |
gtgaaccaagatctggtggaaagtttgtacaatcttcacaaacatgcaatgaggtccaacgttcatgctacaagaccaacttcttcctccgagactaatt |
45705570 |
T |
|
| Q |
221 |
agaagattataaaaatgcaaattgaaatcgatgcactttaggagtacgtttcacaaattg-----atattttgaaggagcaaattgcattcttaattaaa |
315 |
Q |
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| T |
45705571 |
agaagattataaaaatgcaaattgaaatcgatgcactttaggagtacgtttcacaaattgatattatattttgaaggagcaaattgcattcttaattcaa |
45705670 |
T |
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| Q |
316 |
aatggtaggggaaaccaggtaaaacttattacttgtgcatcacttgctaaattcatgtaaatttattttgtcaaatgagatgtggtgtagacaactattc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45705671 |
aatggtaggggaaaccaggtaaaacttattacttgtgcatcacttgctaaattcatgtaaaattattttgtcaaatgagatgtggtgtagacaactattc |
45705770 |
T |
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| Q |
416 |
ctaaatgatatatttaatgagtttcaacataagggtaaaaattatgttgttttttatactctatagatgtattctatttctcttcat |
502 |
Q |
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| T |
45705771 |
ctaaatgatatatttaatgagtttcaacataagggtaaagattatggtgttgtttatactctatagatgtattctatttctcttcat |
45705857 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 29402817 - 29402781
Alignment:
| Q |
303 |
attcttaattaaaaatggtaggggaaaccaggtaaaa |
339 |
Q |
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| T |
29402817 |
attcttaatgaaaaatgctaggggaaaccaggtaaaa |
29402781 |
T |
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