View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_low_14 (Length: 250)
Name: NF17789_low_14
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 43780196 - 43780430
Alignment:
| Q |
13 |
aatattgttgatttgcatttaaggagttatttatgaaaatctgtcattttctttatactcatttctccctctctttttcatttatagggggcaatttaga |
112 |
Q |
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| T |
43780196 |
aatattgttgatttgcatttaaggagttatttatgaaaatctgtcattttctttatactcatttctcactctctttttcatttatagggggcaatttaga |
43780295 |
T |
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| Q |
113 |
atgcacaatgcaacacattttaatcttactgcatatatatcaagtaaagcttccccaaaagtgaattctgcagtaacagttctccctgaactgcttgatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43780296 |
atgcacaatgcaacacattttaatcttactgcatatatatcaagtaaagcttatccaaaagtgaattctgcagtaacagttctccctgaactgcttgatg |
43780395 |
T |
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| Q |
213 |
tagagatgttatcaaaacgtatcatttggcccaag |
247 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43780396 |
tagagatgttatcaaaacgtatcatttggcccaag |
43780430 |
T |
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