View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_low_20 (Length: 215)
Name: NF17789_low_20
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 27792519 - 27792321
Alignment:
| Q |
1 |
cagaacacatccaatatcataaacaacttatcaatatcttcatatatagatcaaacatgtattagatcactcttgttaagaaggttaaccatcttactcc |
100 |
Q |
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| T |
27792519 |
cagaacacatccaatatcataaacaacttatcaatatcttcatatatagatcaaacatgtattagatcactcttgttaagaaggttaaccatcttactcc |
27792420 |
T |
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| Q |
101 |
tgatattcatatgggaaatcatgggactatgaagtcttaaccaagaaccgaggtagggagggacatgggagcctgtttggaaaactagccactgtatct |
199 |
Q |
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| T |
27792419 |
tgatattcgtatgggaaatcatgggactatgaagtcttaaccaagaaccgaggtagggagggacatgggagcctgtttggaaaactagccactgtatct |
27792321 |
T |
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