View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_low_22 (Length: 208)
Name: NF17789_low_22
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 23231423 - 23231568
Alignment:
| Q |
18 |
catataaaaacataataaacatgatgagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctc |
117 |
Q |
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| T |
23231423 |
catataaaaacataataaacatgaggagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctc |
23231522 |
T |
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| Q |
118 |
aaagacattaagcaaaatgtcaagaaaatctttgagtctctcttct |
163 |
Q |
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| T |
23231523 |
aaagacattaagcaaaatgtcaagaaaatctttcagtctctcttct |
23231568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 48602564 - 48602459
Alignment:
| Q |
58 |
taccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttgagtctc |
157 |
Q |
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|||||| || ||||||||||||||| |||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
48602564 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
48602465 |
T |
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| Q |
158 |
tcttct |
163 |
Q |
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|||||| |
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| T |
48602464 |
tcttct |
48602459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 48592889 - 48592764
Alignment:
| Q |
38 |
atgatgagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgt |
137 |
Q |
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| T |
48592889 |
atgaggagaagttatatacgtaccaatattaatgatttgatatgatttctagtaaagttgacttcacagtttttctcactgtagacatctagcaaaatgt |
48592790 |
T |
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| Q |
138 |
caagaaaatctttgagtctctcttct |
163 |
Q |
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| T |
48592789 |
caagaaaatctttcagtctctcttct |
48592764 |
T |
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