View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_low_5 (Length: 415)
Name: NF17789_low_5
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Original strand, 2389355 - 2389747
Alignment:
| Q |
7 |
gtgaaaagaaattaatatttcagaacagattgattccttgataaaataatcgatcttgatcttatcttgaaagtgttggaatagcatacagacctgatat |
106 |
Q |
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| T |
2389355 |
gtgaaaagaaattaatatttcagaacagattgattccttgataaaataattgatcttgatcttatcttgaaagtgttggaatagcatacagacctgatat |
2389454 |
T |
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| Q |
107 |
cagatatggagaaatatgtatgaaatgcaaaggagaaactgaaaggcttgccattgacattccggatgcgagatatcatattcagacggccatctgctgc |
206 |
Q |
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| T |
2389455 |
cggatatcgagaaatatgtatgaaatgcaaaggagaaactgaaaggcttgccattgacattccggatgcgagatatcatattcagacggccatctgctgc |
2389554 |
T |
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| Q |
207 |
caaacagacccttaggcgaaactcgaagctgaataaaataatttagtacataaaacattgttatccaacaatctcaattctcaagatacatgaaatatac |
306 |
Q |
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| T |
2389555 |
caaacagacccttaggcgaaactcgaagctgaataaaataatttagtacataaaacattgtcatccaacaatctcaattctcaagatacatgaaatatac |
2389654 |
T |
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| Q |
307 |
atgttactgtataggaactggggtatctagctacatgcttctgcaatttctactctcttggatgcgattcatcaattgtcctttaatagttat |
399 |
Q |
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| T |
2389655 |
atgttactgtataggaactggggtatctagctacatgcttctggaatttctactctcttggatgcgattcatcaattgtcctttaatggttat |
2389747 |
T |
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