View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17789_low_6 (Length: 406)
Name: NF17789_low_6
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 12494891 - 12495268
Alignment:
| Q |
18 |
tcttcaagtattccttttctaacaaaaccatttcatggtcactttcctttttcctttttctatcaccgtttctttagcttctttctgaacaaccatattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12494891 |
tcttcaagtattccttttctaacaaaaccatttcatggtcactttcttttttcctttttctatcaccgtttctttagcttctttctgaacaaccatattg |
12494990 |
T |
|
| Q |
118 |
gtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12494991 |
gtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaagcatcaatattttct |
12495090 |
T |
|
| Q |
218 |
tcagatttctcgcaatcatgtgcatcattttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12495091 |
tcagatttctcgcaatcatgtgcatcattttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccag |
12495190 |
T |
|
| Q |
318 |
gctggccacacacataaataccatttttgttagcttttcctacacgagttttacatttccttgagctcaaacttctct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495191 |
gctggccacacacataaataccatttttgttagcttttcctacacgagttttacatttccttgagctcaaacttctct |
12495268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 12518695 - 12519072
Alignment:
| Q |
18 |
tcttcaagtattccttttctaacaaaaccatttcatggtcactttcctttttcctttttctatcaccgtttctttagcttctttctgaacaaccatattg |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12518695 |
tcttcaagtattccttttctaagaaaaccatttcatggtcactttcttttttcctttttctatcaccgtttctttagcttctttctgaacaaccatatcg |
12518794 |
T |
|
| Q |
118 |
gtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
12518795 |
gtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatggaaaaaagcatcaatattttct |
12518894 |
T |
|
| Q |
218 |
tcagatttctcgcaatcatgtgcatcattttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12518895 |
tcagatttctcgcaatcatgtgcatcattttcagcagtaaaatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccag |
12518994 |
T |
|
| Q |
318 |
gctggccacacacataaataccatttttgttagcttttcctacacgagttttacatttccttgagctcaaacttctct |
395 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12518995 |
gctggccacacacataaataccgtttttgttagctttgcctacacgagttttacatttccttgagctcaaacttctct |
12519072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 12578987 - 12579365
Alignment:
| Q |
18 |
tcttcaagtattccttttctaacaaaaccatttcatggtcactttcctttttcctttttctatcaccgtttctttagcttctttctgaacaaccatattg |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
12578987 |
tcttcatgtattccttttctaacaaaaccatttcatggtcactttcttttttcctttttctatcaccgtttctttagcttctttctgaacaatcatatcg |
12579086 |
T |
|
| Q |
118 |
gtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
12579087 |
gtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatggaaaaaagcatcaatattttct |
12579186 |
T |
|
| Q |
218 |
tcagattt-ctcgcaatcatgtgcatcattttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatcca |
316 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
12579187 |
tcagatttgctcacaatcatgtgcatcattttcagcaggaacatcagaagaagaaaaaattctaaagtaaggagtatcctcaagatagggacaaaatcca |
12579286 |
T |
|
| Q |
317 |
ggctggccacacacataaataccatttttgttagcttttcctacacgagttttacatttccttgagctcaaacttctct |
395 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12579287 |
ggctggtcacaaacataaataccgtttttgttagcttttcctacatgagttttacatttccttgagctcaaacttctct |
12579365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 147 - 379
Target Start/End: Complemental strand, 12522098 - 12521870
Alignment:
| Q |
147 |
aattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttcttcagatttctcgcaatcatgtgcatcatt |
246 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||||| ||||||||||||| || || ||||||||||||||||| ||| | |||||||||||| ||| |
|
|
| T |
12522098 |
aattacattgttggactctttcacaggattacaatcctcaatagatatgg-aagaagcatcaatattttcttcaacttttgcacaatcatgtgcagaatt |
12522000 |
T |
|
| Q |
247 |
ttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccaggctggccacacacataaataccatttttg |
346 |
Q |
| |
|
||||| || ||| |||||| || |||||| |||||| | ||||||||||||||| | ||||||||| |||||| |||| |||| |||||| ||||| |
|
|
| T |
12521999 |
ttcagtaggaacgtcagaaaaa---aaaattataaaggcaagagtatcctcaagattgagacgaaatctaggctgaccaccaacatgaataccgcttttg |
12521903 |
T |
|
| Q |
347 |
ttagcttttcctacacgagttttacatttcctt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12521902 |
ttagcttttcctacacgagttttacatttcctt |
12521870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 147 - 381
Target Start/End: Complemental strand, 12582344 - 12582117
Alignment:
| Q |
147 |
aattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttcttcagatttctcgcaatcatgtgcatcatt |
246 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||| |||||||||||| || || ||||||||||||||||| ||| | |||||||||||| ||| |
|
|
| T |
12582344 |
aattacattgttggactctttcacaggattacaattc-caatagatatgg-aagaagcatcaatattttcttcaacttttgcacaatcatgtgcaaaatt |
12582247 |
T |
|
| Q |
247 |
ttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccaggctggccacacacataaataccatttttg |
346 |
Q |
| |
|
||||| || |||||||||| ||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||| |||| |||||| ||||| |
|
|
| T |
12582246 |
ttcagtaggaacatcagaa-----aaaaattctaaagccaagagtatcctcaagattgggacgaaatctaggctgaccaccaacatgaataccgcttttg |
12582152 |
T |
|
| Q |
347 |
ttagcttttcctacacgagttttacatttccttga |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12582151 |
ttagcttttcctacacgagttttacatttccttga |
12582117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 144 - 379
Target Start/End: Complemental strand, 12498236 - 12498005
Alignment:
| Q |
144 |
aacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttcttcagatttctcgcaatcatgtgcatc |
243 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||| ||||||||||||| || || ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
12498236 |
aacaattacattgttggactctttcacaggattacaatcctcaatagatatgg-aagaagcatcaatattttcttcaacttttgcacaatcatgtgcaga |
12498138 |
T |
|
| Q |
244 |
attttcagcagtaacatcagaagaagaaaaaattctaaaggaaggagtatcctcaagatggggacgaaatccaggctggccacacacataaataccattt |
343 |
Q |
| |
|
|||||||| || ||| |||||| || ||||||||||||| | ||||||||||||||| | ||||||||| |||||| |||| |||| |||||| || |
|
|
| T |
12498137 |
attttcagtaggaacgtcagaaaaa---aaaattctaaaggcaagagtatcctcaagattgagacgaaatctaggctgaccaccaacatgaataccgctt |
12498041 |
T |
|
| Q |
344 |
ttgttagcttttcctacacgagttttacatttcctt |
379 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
12498040 |
ttgctatcttttcctacacgagctttacatttcctt |
12498005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 20047227 - 20046985
Alignment:
| Q |
18 |
tcttcaagtattccttttctaacaaaaccatttcatggtcactttccttt-ttcctttttctatcaccgtttctttagcttctttctgaacaaccatatt |
116 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||||| ||||||| ||| ||||||||||| | ||| ||||||||||| ||| |||||| |||||| |
|
|
| T |
20047227 |
tcttcaagtattcctcttctaataaaatctcttcatgaccactttcatttcttcctttttctctaaccttttctttagctgcttcttgaacagccatatc |
20047128 |
T |
|
| Q |
117 |
ggtgtgaaactgaagatcttgttgtttaacaattacattgttgtagtctttcacatgattacaatcgtcaatagatatgggaaaaaacatcaatattttc |
216 |
Q |
| |
|
| ||||||| |||||||| |||||| || |||||||||||| | |||||| || |||||||||| ||| ||||||| |||| || || |||||||||| |
|
|
| T |
20047127 |
agagtgaaacagaagatctggttgttcaaaaattacattgttcgactctttcgcaggattacaatcctcagtagatat-ggaagaagcaacaatattttc |
20047029 |
T |
|
| Q |
217 |
ttcagatttctcgcaatcatgtgcatcattttcagcagtaacat |
260 |
Q |
| |
|
||| |||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
20047028 |
aacagctttcgcacaatcatgtgcagaattttcagcaggaacat |
20046985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 6396995 - 6397042
Alignment:
| Q |
332 |
taaataccatttttgttagcttttcctacacgagttttacatttcctt |
379 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6396995 |
taaataccacttttgttagcttttctaacacgagttttacatttcctt |
6397042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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