View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17789_low_9 (Length: 291)
Name: NF17789_low_9
Description: NF17789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17789_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3880402 - 3880132
Alignment:
| Q |
1 |
aatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaacaactaat |
100 |
Q |
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| T |
3880402 |
aatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaacaactaat |
3880303 |
T |
|
| Q |
101 |
aatgattcatgcaattatttcaactaaagtcacaaatttcagtaattctttaaactgattttgtgagaataccaagaataccctttcataaacttcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880302 |
aatgattcatgcaattatttcaactaaagtcacaaatttcagtagttctttaaactgattttgtgagaataccaagaataccctttcataaacttcatca |
3880203 |
T |
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| Q |
201 |
atatgacatac---aaaagtacatcagtattataaaaatcacacgcaaaacttcaatcaataagttatggt |
268 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3880202 |
atatgacatacaaaaaaagtacatcagtattataaaaatcacaagcaaaacttcaatcaataagttatggt |
3880132 |
T |
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