View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1778_high_2 (Length: 287)
Name: NF1778_high_2
Description: NF1778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1778_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 49545160 - 49544963
Alignment:
| Q |
1 |
caactatttccctccataatgacatcaactccacatctgaataatccatgaccctgtcaactctgtcttgcaactcctgcataaagaaaattacgaaaca |
100 |
Q |
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| T |
49545160 |
caactatttccctccataatgacatcaactccaaatctgaataatccatgaccctgtcaactctgtcttgcaactcctgcataaagaaaattacgaaaca |
49545061 |
T |
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| Q |
101 |
tacaacatatgtcaaggccggaccaatacatattgaggcatacgacggatttaaaaataaggctacctatgtttatgttaccttccatttgatgatgt |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545060 |
tacaacatatgtcaaggctggaccaatacatattgaggcatacgacggatttaaaaataaggctacctatgtttatgttaccttccatttgatgatgt |
49544963 |
T |
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