View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1778_high_3 (Length: 251)

Name: NF1778_high_3
Description: NF1778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1778_high_3
NF1778_high_3
[»] chr7 (17 HSPs)
chr7 (1-73)||(25187707-25187779)
chr7 (154-207)||(9778511-9778564)
chr7 (163-207)||(3991335-3991379)
chr7 (168-241)||(13557750-13557821)
chr7 (154-207)||(7438717-7438770)
chr7 (154-207)||(24339653-24339706)
chr7 (154-207)||(26033456-26033509)
chr7 (163-207)||(11061080-11061124)
chr7 (154-224)||(18038994-18039063)
chr7 (100-207)||(5409771-5409884)
chr7 (165-207)||(13770702-13770744)
chr7 (163-201)||(21560520-21560558)
chr7 (154-207)||(11665435-11665488)
chr7 (154-232)||(2334239-2334314)
chr7 (163-207)||(9408338-9408382)
chr7 (167-207)||(25481913-25481953)
chr7 (163-207)||(33994223-33994267)
[»] chr1 (19 HSPs)
chr1 (100-237)||(18471284-18471414)
chr1 (154-207)||(47989508-47989561)
chr1 (154-240)||(31694705-31694788)
chr1 (102-207)||(1486646-1486757)
chr1 (163-207)||(18337340-18337384)
chr1 (163-207)||(24577190-24577234)
chr1 (163-207)||(40258937-40258981)
chr1 (98-207)||(1704933-1705040)
chr1 (163-205)||(1815270-1815312)
chr1 (153-241)||(5944263-5944348)
chr1 (153-207)||(6612165-6612219)
chr1 (163-201)||(51410042-51410080)
chr1 (154-207)||(113310-113363)
chr1 (166-207)||(32434723-32434764)
chr1 (99-207)||(38078600-38078709)
chr1 (163-207)||(19058860-19058904)
chr1 (163-207)||(22515891-22515935)
chr1 (163-207)||(22881620-22881664)
chr1 (163-207)||(42359453-42359497)
[»] chr3 (21 HSPs)
chr3 (160-207)||(21256987-21257034)
chr3 (163-200)||(3865692-3865729)
chr3 (163-200)||(8593155-8593192)
chr3 (163-207)||(26508121-26508165)
chr3 (163-207)||(28918012-28918056)
chr3 (163-207)||(39756247-39756291)
chr3 (164-207)||(35312065-35312108)
chr3 (163-241)||(16000020-16000093)
chr3 (166-207)||(11610532-11610573)
chr3 (166-207)||(14209124-14209165)
chr3 (154-207)||(49651781-49651834)
chr3 (163-207)||(1509550-1509594)
chr3 (167-207)||(4987299-4987339)
chr3 (163-207)||(8587025-8587069)
chr3 (163-207)||(10954963-10955007)
chr3 (163-207)||(20503476-20503520)
chr3 (154-198)||(22774065-22774109)
chr3 (163-207)||(34185127-34185171)
chr3 (163-207)||(34910328-34910372)
chr3 (163-207)||(51206357-51206401)
chr3 (163-207)||(55401086-55401130)
[»] chr2 (14 HSPs)
chr2 (98-194)||(29367281-29367379)
chr2 (163-237)||(19536401-19536471)
chr2 (163-237)||(18421949-18422018)
chr2 (163-207)||(2438723-2438767)
chr2 (160-207)||(6940266-6940313)
chr2 (164-207)||(30404855-30404898)
chr2 (166-205)||(33153437-33153476)
chr2 (165-207)||(20473333-20473375)
chr2 (154-237)||(23058437-23058516)
chr2 (165-207)||(30717536-30717578)
chr2 (163-205)||(38442320-38442362)
chr2 (163-241)||(21624248-21624322)
chr2 (156-192)||(11223860-11223896)
chr2 (171-240)||(29367381-29367446)
[»] chr5 (17 HSPs)
chr5 (154-200)||(21351900-21351946)
chr5 (163-237)||(15382463-15382534)
chr5 (161-207)||(7218269-7218315)
chr5 (163-207)||(6247633-6247677)
chr5 (163-218)||(12199929-12199985)
chr5 (163-207)||(21191060-21191104)
chr5 (163-207)||(33178036-33178080)
chr5 (160-207)||(24906302-24906349)
chr5 (100-143)||(27932311-27932354)
chr5 (163-201)||(15884005-15884043)
chr5 (165-207)||(21576751-21576793)
chr5 (154-207)||(21542041-21542094)
chr5 (166-207)||(39698552-39698593)
chr5 (163-207)||(10298580-10298624)
chr5 (163-207)||(13287403-13287447)
chr5 (159-207)||(22299481-22299528)
chr5 (163-207)||(42893371-42893415)
[»] chr6 (18 HSPs)
chr6 (163-207)||(9522902-9522946)
chr6 (100-239)||(24645464-24645600)
chr6 (163-201)||(4877960-4877998)
chr6 (163-237)||(34595120-34595189)
chr6 (154-207)||(16766708-16766761)
chr6 (163-207)||(10770678-10770722)
chr6 (100-207)||(28715306-28715414)
chr6 (107-207)||(7930316-7930413)
chr6 (163-241)||(16833290-16833363)
chr6 (154-207)||(9107365-9107418)
chr6 (163-207)||(9911532-9911577)
chr6 (166-207)||(31384931-31384972)
chr6 (163-207)||(1700363-1700407)
chr6 (163-207)||(7801160-7801204)
chr6 (163-207)||(7977834-7977878)
chr6 (154-231)||(8713971-8714044)
chr6 (155-207)||(18252747-18252799)
chr6 (163-199)||(28152117-28152153)
[»] chr4 (11 HSPs)
chr4 (163-207)||(23292990-23293034)
chr4 (167-237)||(27706185-27706250)
chr4 (163-207)||(29205455-29205499)
chr4 (96-201)||(42640546-42640647)
chr4 (155-204)||(28000738-28000787)
chr4 (166-207)||(28964255-28964296)
chr4 (163-207)||(6485615-6485659)
chr4 (167-207)||(11596360-11596400)
chr4 (163-199)||(12797342-12797378)
chr4 (163-207)||(21945514-21945558)
chr4 (163-207)||(54580027-54580071)
[»] chr8 (11 HSPs)
chr8 (100-207)||(8342983-8343086)
chr8 (154-207)||(22651987-22652040)
chr8 (163-207)||(4948663-4948707)
chr8 (163-207)||(25192351-25192395)
chr8 (163-207)||(25566852-25566896)
chr8 (163-207)||(29510308-29510352)
chr8 (165-207)||(18407730-18407772)
chr8 (163-207)||(2572060-2572104)
chr8 (163-207)||(20873080-20873124)
chr8 (167-207)||(22596005-22596045)
chr8 (163-207)||(40332202-40332246)
[»] scaffold0136 (1 HSPs)
scaffold0136 (166-207)||(3856-3897)
[»] scaffold0083 (1 HSPs)
scaffold0083 (163-237)||(45534-45604)
[»] scaffold0027 (1 HSPs)
scaffold0027 (163-237)||(46668-46737)
[»] scaffold0025 (1 HSPs)
scaffold0025 (163-201)||(23787-23825)
[»] scaffold0223 (1 HSPs)
scaffold0223 (166-207)||(20183-20224)
[»] scaffold0021 (1 HSPs)
scaffold0021 (163-200)||(130500-130537)
[»] scaffold0652 (1 HSPs)
scaffold0652 (163-207)||(466-510)
[»] scaffold0103 (1 HSPs)
scaffold0103 (167-207)||(51822-51862)
[»] scaffold0011 (1 HSPs)
scaffold0011 (163-207)||(17753-17797)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25187707 - 25187779
Alignment:
Q  1 catcctatgcctttcattctcttccaactagagtatgtatataccctcaagggaatgtttggattgatagtat 73  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25187707 catcctatgcctttcattctcttccaactagggtatgtatataccctcaagggaatgtttggattgatagtat 25187779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 9778564 - 9778511
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||| ||||||    
T  9778564 cgacacgacaccgacacttgtaattatactgaattatgtgattttttcaaatta 9778511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 3991379 - 3991335
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  3991379 accgacacttgtaattatactgaattatgtgattttttcaaatta 3991335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 13557750 - 13557821
Alignment:
Q  168 cacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtg 241  Q
    |||||||||||| |||||||||||||| ||||||   ||||||||||| || ||||| ||||||| ||||||||    
T  13557750 cacttgtaattacactgaattatgtgattttttt--tttaaattattagttttgtcggcgtgtcagtgtctgtg 13557821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 7438770 - 7438717
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||| ||||||||||||||||| | |||||||||||| ||||| ||||||    
T  7438770 cgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 24339706 - 24339653
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  24339706 cgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 26033456 - 26033509
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  26033456 cgacacgagaccgacacttgtaattacactgaattatgtgattttttcaaatta 26033509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 11061080 - 11061124
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||    
T  11061080 accgacacttgtaattatactaaattatgtgattttttcaaatta 11061124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 18039063 - 18038994
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgactttttt-aaattaaattattaattgtgtcg 224  Q
    ||||| || ||||||||||||||||| |||||||||||||| |||||| |||||  ||||||| ||||||||    
T  18039063 cgacacgacaccgacacttgtaattacactgaattatgtgatttttttcaaatt--attattagttgtgtcg 18038994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 5409771 - 5409884
Alignment:
Q  100 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcg------acatgataccgacacttgtaattatactgaattatgtg 193  Q
    |||||||||||  |||||||||| |||||| ||||   ||||||| |||| |||||      ||| || ||||||||||||||||  |||||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttgtaattgcactgaattatgtg 5409870  T
Q  194 acttttttaaatta 207  Q
    | ||||| ||||||    
T  5409871 attttttcaaatta 5409884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 13770744 - 13770702
Alignment:
Q  165 cgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||| |||||||||||| | ||||||||||||    
T  13770744 cgacacttgtaattacactgaattatgtaatttttttaaatta 13770702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 21560558 - 21560520
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttttt 201  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  21560558 accgacacttgtaattacactgaattatgtgattttttt 21560520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 11665435 - 11665488
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||| | |||||||| |||||| |||||||||||||| ||||| ||||||    
T  11665435 cgacatgacatcgacacttataattagactgaattatgtgattttttcaaatta 11665488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 2334314 - 2334239
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtca 232  Q
    ||||| || ||||||||||||||||| ||| |||||||||| ||||||   | |||||||||| | ||||| |||||||    
T  2334314 cgacacgacaccgacacttgtaattacactaaattatgtgattttttt---tcaaattattaactttgtcgccgtgtca 2334239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 9408338 - 9408382
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  9408338 accgacacttgtaattacactaaattatgtgattttttcaaatta 9408382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 25481953 - 25481913
Alignment:
Q  167 acacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  25481953 acacttgtaattacactgaattatgtgattttttcaaatta 25481913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 33994267 - 33994223
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||  ||||||||||||||| |||| ||||||    
T  33994267 accgacacttgtaattgcactgaattatgtgaccttttcaaatta 33994223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 18471414 - 18471284
Alignment:
Q  100 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgactttt 199  Q
    |||||||| ||  ||||||||||||||||| |||||  ||||||| |||| |||||   || ||||||||||||||||||||||||||||||||| ||||    
T  18471414 ctatgaagtacggacactcctcgaattaggtgtgtttcggtgtcggacacgtgtcg---tg-taccgacacttgtaattatactgaattatgtgattttt 18471319  T
Q  200 ttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||   | |||||||||  |||||||||| |||||||||    
T  18471318 tt---tcaaattattagctgtgtcgacgggtcattgtc 18471284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 47989561 - 47989508
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||    
T  47989561 cgacacgacaccgacacttgtaattacactgaattatgtgatttttttaaatta 47989508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 31694705 - 31694788
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgt 240  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||   | |||||||||  | ||||||||| ||| |||||||    
T  31694705 cgacacgacaccgacacttgtaattatactgaattatgtgattttttt---tcaaattattagctatgtcgacgtatcagtgtctgt 31694788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 1486646 - 1486757
Alignment:
Q  102 atgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcg------acatgataccgacacttgtaattatactgaattatgtgac 195  Q
    |||||||||| |||||||||| |||||| ||||   ||||||| |||| |||||      ||| || |||||||||| |||||| ||||||||||||||     
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgat 1486745  T
Q  196 ttttttaaatta 207  Q
    ||||| ||||||    
T  1486746 tttttcaaatta 1486757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 18337384 - 18337340
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  18337384 accgacacttgtaattacactgaattatgtgattttttcaaatta 18337340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 24577190 - 24577234
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  24577190 accgacacttgtaattacactgaattatgtgattttttcaaatta 24577234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 40258937 - 40258981
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  40258937 accgacacttgtaattacactgaattatgtgattttttcaaatta 40258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 1704933 - 1705040
Alignment:
Q  98 atctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgactt 197  Q
    ||||||||||||   |||||||| | |||||| ||||   ||||||| ||||  || |||| || |||||||||||||||||  ||||||||||||| ||    
T  1704933 atctatgaagcatggacactccttggattaggcgtgtctcggtgtcggacac--gttgacacgacaccgacacttgtaattaccctgaattatgtgattt 1705030  T
Q  198 ttttaaatta 207  Q
    ||| ||||||    
T  1705031 tttcaaatta 1705040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 1815312 - 1815270
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaat 205  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||    
T  1815312 accgacacttgtaattacactgaattatgtgattttttaaaat 1815270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 5944348 - 5944263
Alignment:
Q  153 tcgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtg 241  Q
    |||||| || |||||||||| |||||| |||||||||||||| ||||||   | |||||||||  |||| || ||||||| ||||||||    
T  5944348 tcgacacgacaccgacacttataattacactgaattatgtgattttttt---tcaaattattagctgtggcggcgtgtcagtgtctgtg 5944263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 6612165 - 6612219
Alignment:
Q  153 tcgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||| || ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  6612165 tcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaatta 6612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 51410080 - 51410042
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttttt 201  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  51410080 accgacacttgtaattacactgaattatgtgattttttt 51410042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 113363 - 113310
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||| ||||||||||||| |||||||||||||| ||||| ||||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtgattttttcaaatta 113310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 32434723 - 32434764
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| | |||||||||||||||||| ||||||    
T  32434723 gacacttgtaattacaatgaattatgtgactttttcaaatta 32434764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 38078600 - 38078709
Alignment:
Q  99 tctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacat-gataccgacacttgtaattatactgaattatgtgactt 197  Q
    |||||||||||| || |||||||| |||||| ||||  |||||| |||||  |||||     || ||||||||||||||||| | |||||||||||| ||    
T  38078600 tctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattt 38078699  T
Q  198 ttttaaatta 207  Q
    ||| ||||||    
T  38078700 tttcaaatta 38078709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 19058860 - 19058904
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||| |  |||||||||||    
T  19058860 accgacacttgtaattacactgaattatgttatctttttaaatta 19058904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 22515891 - 22515935
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  22515891 accgacacttgtaattacactaaattatgtgattttttcaaatta 22515935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 22881620 - 22881664
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  22881620 accgacacttgtaattacactaaattatgtgattttttcaaatta 22881664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 42359453 - 42359497
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  42359453 accgacacttgtaattacactgaattttgtgattttttcaaatta 42359497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 21256987 - 21257034
Alignment:
Q  160 gataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  21256987 gataccgacacttgtaattatactgaattatgtgattttttcaaatta 21257034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 3865729 - 3865692
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttt 200  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3865729 accgacacttgtaattatactgaattatgtgagttttt 3865692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 8593192 - 8593155
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttt 200  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8593192 accgacacttgtaattatactgaattatgtgatttttt 8593155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 26508165 - 26508121
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  26508165 accgacacttgtaattacactgaattatgtgattttttcaaatta 26508121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 28918056 - 28918012
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  28918056 accgacacttgtaattacactgaattatgtgattttttcaaatta 28918012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 39756291 - 39756247
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||    
T  39756291 accgacacttgtaattatattaaattatgtgatttttttaaatta 39756247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 35312108 - 35312065
Alignment:
Q  164 ccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||| |||||||||||| || |||||||||||    
T  35312108 ccgacacttgtaattacactgaattatgtaacatttttaaatta 35312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 16000020 - 16000093
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtg 241  Q
    ||||||||||||| ||| |||||||||||| | ||||     ||||||||||| |||||||| ||||||| ||||||||    
T  16000020 accgacacttgtagttacactgaattatgttattttt-----ttaaattattagttgtgtcggcgtgtcagtgtctgtg 16000093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 11610573 - 11610532
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||| || |||||||||||||| ||||||||||||    
T  11610573 gacacttgtaactacactgaattatgtgatttttttaaatta 11610532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 14209165 - 14209124
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  14209165 gacacttgtaattacactgaattatgtgattttttaaaatta 14209124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 49651781 - 49651834
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| | |||||||||||| ||||| ||||||    
T  49651781 cgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaatta 49651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 1509594 - 1509550
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  1509594 accgacacttgtaattacactaaattatgtgattttttcaaatta 1509550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 4987299 - 4987339
Alignment:
Q  167 acacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  4987299 acacttgtaattacactgaattatgtgattttttcaaatta 4987339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 8587025 - 8587069
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  8587025 accgacacttgtaattacacttaattatgtgattttttcaaatta 8587069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 10955007 - 10954963
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||    
T  10955007 accgacacttgtgattacactgaattatgtgattttttcaaatta 10954963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 20503520 - 20503476
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  20503520 accgacacttgtaattacactgaattatgtcattttttcaaatta 20503476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 22774065 - 22774109
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttt 198  Q
    |||||||| |||||||||| |||||| |||||| |||||||||||    
T  22774065 cgacatgacaccgacacttataattacactgaaatatgtgacttt 22774109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 34185127 - 34185171
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  34185127 accgacacttgtaattacactgaattgtgtgattttttgaaatta 34185171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 34910372 - 34910328
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||| |||||||||| |||||||||||||| ||||| ||||||    
T  34910372 accgactcttgtaattacactgaattatgtgattttttcaaatta 34910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 51206357 - 51206401
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||    
T  51206357 accgacacttgtatttacactgaattatgtgattttttcaaatta 51206401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 55401130 - 55401086
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  55401130 accgacacttgtaattacactaaattatgtgattttttcaaatta 55401086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 29367281 - 29367379
Alignment:
Q  98 atctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgt--cgacatgataccgacacttgtaattatactgaattatgtga 194  Q
    |||||||||||||||||| |||||| ||||||  |||   ||||||| ||||||||  ||||| |||||||||| ||||||||| ||| ||||||||||    
T  29367281 atctatgaagcacaaacattcctcggattaggcatgtctcggtgtcggacacatgtaccgacacgataccgacatttgtaattacactaaattatgtga 29367379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 19536401 - 19536471
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||||||||||||||| |||||||||||||| |||||    | ||||||||| |||||||| ||||||||||||    
T  19536401 accgacacttgtaattacactgaattatgtgatttttt----tcaaattattagttgtgtcggcgtgtcattgtc 19536471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 18422018 - 18421949
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||||||||||||||| ||||||||||||||  |||||||     |||||||||||||||| ||||||| ||||    
T  18422018 accgacacttgtaattacactgaattatgtgatatttttaa-----attattaattgtgtcggcgtgtcagtgtc 18421949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 2438723 - 2438767
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  2438723 accgacacttgtaattacactgaattatgtgattttttgaaatta 2438767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 6940313 - 6940266
Alignment:
Q  160 gataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||||||| ||| |||||||| ||||||| ||||||    
T  6940313 gataccgacacttgtaattacacttaattatgtaactttttaaaatta 6940266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 30404855 - 30404898
Alignment:
Q  164 ccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||| |||||||||||||| ||||| ||||||    
T  30404855 ccgacacttgtaattacactgaattatgtgattttttcaaatta 30404898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 33153476 - 33153437
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaat 205  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  33153476 gacacttgtaattacactgaattatgtgatttttttaaat 33153437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 20473375 - 20473333
Alignment:
Q  165 cgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||    
T  20473375 cgacacttgtaattacactgaattatatgagttttttaaatta 20473333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 23058437 - 23058516
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||| || ||||||||||||||||| |||| ||||||||| |||||    | |||||||||||||||| | ||||||| ||||    
T  23058437 cgacacgacaccgacacttgtaattacactggattatgtgatttttt----tcaaattattaattgtgtgggcgtgtcactgtc 23058516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 30717536 - 30717578
Alignment:
Q  165 cgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||    
T  30717536 cgacacttgtaattacactgaattatgtgattttttcaaatta 30717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 38442362 - 38442320
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaat 205  Q
    |||||||||| |||||||| |||||||||||| ||||||||||    
T  38442362 accgacacttataattatattgaattatgtgatttttttaaat 38442320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 21624322 - 21624248
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtg 241  Q
    ||||||||||||||||| |||||||||||  | |||||||    |||||||||  ||||||| ||||||| ||||||||    
T  21624322 accgacacttgtaattacactgaattatgctattttttta----aaattattagctgtgtcggcgtgtcagtgtctgtg 21624248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 11223860 - 11223896
Alignment:
Q  156 acatgataccgacacttgtaattatactgaattatgt 192  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  11223860 acatgacaccgacacttgtaattacactgaattatgt 11223896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 29367381 - 29367446
Alignment:
Q  171 ttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgt 240  Q
    ||||||||| |||||||||||||| |||||||    ||||||||||||||| || ||||||  |||||||    
T  29367381 ttgtaattacactgaattatgtgattttttta----aaattattaattgtgccggcgtgtccgtgtctgt 29367446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 21351900 - 21351946
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttt 200  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  21351900 cgacatgacaccgacacttgtaattacactgaattatgtgacttttt 21351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 15382534 - 15382463
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    |||||||||||||||||||||||||||| ||| ||||||   | |||||||||  ||||||| ||||||||||||    
T  15382534 accgacacttgtaattatactgaattatatgattttttt---tcaaattattagctgtgtcggcgtgtcattgtc 15382463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 7218269 - 7218315
Alignment:
Q  161 ataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||    
T  7218269 ataccgacacttgtaattacactgaattatgtgatttatttaaatta 7218315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 6247677 - 6247633
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  6247677 accgacacttgtaattacactgaattatgtgattttttcaaatta 6247633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 12199985 - 12199929
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttttta-aattaaattattaatt 218  Q
    |||||||||||||||| ||||||||||||||| |||||||   ||||||||||||||    
T  12199985 accgacacttgtaattgtactgaattatgtgatttttttatctttaaattattaatt 12199929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 21191060 - 21191104
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  21191060 accgacacttgtaattacactgaattatgtgattttttcaaatta 21191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 33178080 - 33178036
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  33178080 accgacacttgtaattacactaaattatgtgatttttttaaatta 33178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 24906302 - 24906349
Alignment:
Q  160 gataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||||||| |||||||||||| | ||||| ||||||    
T  24906302 gataccgacacttgtaattacactgaattatgtcattttttcaaatta 24906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 27932354 - 27932311
Alignment:
Q  100 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtc 143  Q
    |||||||||||||||||||||||||||||| ||||  |||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtc 27932311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 15884043 - 15884005
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttttt 201  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  15884043 accgacacttgtaattacactgaattatgtgattttttt 15884005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 21576751 - 21576793
Alignment:
Q  165 cgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||    
T  21576751 cgacacttgtaattacactgaattatgtgattttttcaaatta 21576793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 21542094 - 21542041
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| |||||||||||| |  |||||||||||    
T  21542094 cgacacgacaccgacacttgtaattacactgaattatgttatctttttaaatta 21542041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 39698593 - 39698552
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  39698593 gacacttgtaattacactgaattatgtgattttttcaaatta 39698552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 10298624 - 10298580
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| | || ||||||||||||||| ||||||    
T  10298624 accgacacttgtaattacattgtattatgtgactttttcaaatta 10298580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 13287403 - 13287447
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||    
T  13287403 accgacacttgtagttacactgaattatgtgattttttcaaatta 13287447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 22299481 - 22299528
Alignment:
Q  159 tgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||| ||| |||||||||||||||||| |||||| ||||||||||||    
T  22299481 tgatactgacccttgtaattatactgaatcatgtga-ttttttaaatta 22299528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 42893415 - 42893371
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||| ||||||||| ||||| ||||||    
T  42893415 accgacacttgtaattacactggattatgtgattttttcaaatta 42893371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 9522946 - 9522902
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  9522946 accgacacttgtaattacactgaattatgtgatttttttaaatta 9522902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 24645600 - 24645464
Alignment:
Q  100 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgaca-tgataccgacacttgtaattatactgaattatgtgacttt 198  Q
    |||||||||||| |||||| ||| |||||  ||||  |||||||| |||| |||||    ||| |||||||||||||| ||||||||||||||||| |||    
T  24645600 ctatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttt 24645501  T
Q  199 tttaaattaaattattaattgtgtcgacgtgtcattgtctg 239  Q
    ||    | |||||||||  ||||||||| ||||| ||||||    
T  24645500 tt----tcaaattattagctgtgtcgacatgtcagtgtctg 24645464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 4877998 - 4877960
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttttt 201  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4877998 accgacacttgtaattatacttaattatgtgactttttt 4877960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 34595189 - 34595120
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||||||||||||||| |||||||||||||| ||||     | ||||||||| |||||||| ||||||||||||    
T  34595189 accgacacttgtaattacactgaattatgtgattttt-----tcaaattattagttgtgtcggcgtgtcattgtc 34595120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 16766761 - 16766708
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  16766761 cgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 10770678 - 10770722
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  10770678 accgacacttgtaattacactgaattatgtgattttttcaaatta 10770722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 28715414 - 28715306
Alignment:
Q  100 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacat-gataccgacacttgtaattatactgaattatgtgacttt 198  Q
    |||||||||||  ||||| ||||||||||| ||||   |||||||||||| |||||     || ||||||||||||||||| |||||||||||| | |||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcatttt 28715315  T
Q  199 tttaaatta 207  Q
    || ||||||    
T  28715314 ttcaaatta 28715306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 7930413 - 7930316
Alignment:
Q  107 gcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatt 206  Q
    |||| |||||||||||||||||| ||||  |||||||| |||| |   |||| || ||||||||||| ||||  ||| |||||||||| ||||| |||||    
T  7930413 gcacgaacactcctcgaattaggcgtgtcctggtgtcggacacgt---gacacgacaccgacacttgaaatttcactaaattatgtgattttttcaaatt 7930317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 16833363 - 16833290
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtctgtg 241  Q
    ||||||||||||||||| |||||| ||||||| ||||     | ||||||||| |||||||| ||||||| ||||||||    
T  16833363 accgacacttgtaattacactgaagtatgtgattttt-----tcaaattattagttgtgtcggcgtgtcagtgtctgtg 16833290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 9107365 - 9107418
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  9107365 cgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaatta 9107418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 9911532 - 9911577
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactt-ttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||    
T  9911532 accgacacttgtaattacactgaattatgtgatttcttttaaatta 9911577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 31384972 - 31384931
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  31384972 gacacttgtaattacactgaattatgtgattttttcaaatta 31384931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 1700407 - 1700363
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||| |||||| |||||| ||||||| ||||||||||||    
T  1700407 accgacacttataattacactgaaatatgtgatttttttaaatta 1700363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 7801160 - 7801204
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||||  ||||||||||||| ||||| ||||||    
T  7801160 accgacacttgtaattacgctgaattatgtgattttttcaaatta 7801204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 7977834 - 7977878
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  7977834 accgacacttgtaattacactgaattatgtaattttttcaaatta 7977878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 8714044 - 8713971
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtc 231  Q
    ||||| || ||| ||| ||||||||| |||||||||||||| |||||    | |||||||||| ||||||||||||||    
T  8714044 cgacacgacacccacatttgtaattacactgaattatgtgatttttt----tcaaattattaactgtgtcgacgtgtc 8713971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 18252747 - 18252799
Alignment:
Q  155 gacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||| ||||||||||| |||||||| ||| |||||||| | ||||||||||||    
T  18252747 gacacgataccgacacctgtaattacactaaattatgtcatttttttaaatta 18252799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 28152153 - 28152117
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttt 199  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  28152153 accgacacttgtaattacactgaattatgtgattttt 28152117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 23292990 - 23293034
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  23292990 accgacacttgtaattatactgaattatgtgattttttcaaatta 23293034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 27706185 - 27706250
Alignment:
Q  167 acacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||||||||||| ||| |||||||||| ||||     |||||||||||||||||||||||||||| ||||    
T  27706185 acacttgtaattacactaaattatgtgattttt-----ttaaattattaattgtgtcgacgtgtcagtgtc 27706250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 29205499 - 29205455
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  29205499 accgacacttgtaattacactgaattatgtgattttttcaaatta 29205455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 42640647 - 42640546
Alignment:
Q  96 agatctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgac 195  Q
    |||||||||||||||  | |||||||| |||||| ||||  ||||| || |||| ||||     || ||||||||||||||||| ||||||||||||||     
T  42640647 agatctatgaagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtcc----gacaccgacacttgtaattacactgaattatgtgat 42640552  T
Q  196 tttttt 201  Q
    ||||||    
T  42640551 tttttt 42640546  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 28000738 - 28000787
Alignment:
Q  155 gacatgataccgacacttgtaattatactgaattatgtgacttttttaaa 204  Q
    ||||||| ||||||||||||||||| |||||||||| ||| | |||||||    
T  28000738 gacatgacaccgacacttgtaattacactgaattatatgattattttaaa 28000787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 28964255 - 28964296
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  28964255 gacacttgtaattacactgaattatgtgattttttcaaatta 28964296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 6485615 - 6485659
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  6485615 accgacacttgtaattacactaaattatgtgattttttcaaatta 6485659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 11596360 - 11596400
Alignment:
Q  167 acacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  11596360 acacttgtaattacactgaattatgtgattttttcaaatta 11596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 12797342 - 12797378
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttt 199  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  12797342 accgacacttgtaattacactgaattatgtgattttt 12797378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 21945558 - 21945514
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  21945558 accgacacttgtaattacactgaattatgtcattttttcaaatta 21945514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 54580027 - 54580071
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||| |||||| |||||||||||||| ||||| ||||||    
T  54580027 accgacacttataattacactgaattatgtgattttttcaaatta 54580071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 8343086 - 8342983
Alignment:
Q  100 ctatgaagcacaaacactcctcgaattaggggtgttatggtgtcgaacacatgtcgacatgataccgacacttgtaattatactgaattatgtgactttt 199  Q
    |||||||||||| |||||| ||| |||||| ||||   ||||||| ||||||||    | || ||||||||||||||||| ||| |||||||||| ||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgt----acgacaccgacacttgtaattacactaaattatgtgattttt 8342991  T
Q  200 ttaaatta 207  Q
    | ||||||    
T  8342990 tcaaatta 8342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 22652040 - 22651987
Alignment:
Q  154 cgacatgataccgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||| || ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  22652040 cgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 4948707 - 4948663
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  4948707 accgacacttgtaattacactgaattatgtgattttttcaaatta 4948663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 25192351 - 25192395
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||    
T  25192351 accgacacttataattatactgaattatgtcactttttcaaatta 25192395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 25566896 - 25566852
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  25566896 accgacacttgtaattacactgaattatgtgattttttcaaatta 25566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 29510308 - 29510352
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||    
T  29510308 accgacacttgtaattatactgaattttgtgattttttcaaatta 29510352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 18407772 - 18407730
Alignment:
Q  165 cgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||| |||||||||||||| |||||| |||||    
T  18407772 cgacacttgtaattacactgaattatgtgatttttttgaatta 18407730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 2572060 - 2572104
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  2572060 accgacacttgtaattacactaaattatgtgattttttcaaatta 2572104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 20873124 - 20873080
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  20873124 accgacacttgtaattacactaaattatgtgattttttcaaatta 20873080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 22596045 - 22596005
Alignment:
Q  167 acacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| |||||||||||| | ||||||||||||    
T  22596045 acacttgtaattacactgaattatgttatttttttaaatta 22596005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 40332246 - 40332202
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||    
T  40332246 accgacacttgtaattacactgaattatgtgattttctcaaatta 40332202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 3856 - 3897
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  3856 gacacttgtaattacactgaattatgtgatttttttaaatta 3897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 45534 - 45604
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||||||||||||||| |||||||||||| | ||||||   ||| || ||||||||||||||||||||| ||||    
T  45534 accgacacttgtaattacactgaattatgt-attttttt---ttagataattaattgtgtcgacgtgtcagtgtc 45604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 46737 - 46668
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaattaaattattaattgtgtcgacgtgtcattgtc 237  Q
    ||||||| ||||||||| |||||||||||||| ||||     | |||||||||| ||||||| ||||||||||||    
T  46737 accgacatttgtaattacactgaattatgtgattttt-----tcaaattattaactgtgtcggcgtgtcattgtc 46668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 23825 - 23787
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgactttttt 201  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  23825 accgacacttgtaattacactgaattatgtgattttttt 23787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 20224 - 20183
Alignment:
Q  166 gacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  20224 gacacttgtaattacactgaattatgtgattttttcaaatta 20183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 130537 - 130500
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttt 200  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  130537 accgacacttgtaattacactgaattatgtgatttttt 130500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 466 - 510
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  466 accgacacttgtaattacactgaattttgtgattttttcaaatta 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 51862 - 51822
Alignment:
Q  167 acacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  51862 acacttgtaattacactgaattatgtgattttttcaaatta 51822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 17753 - 17797
Alignment:
Q  163 accgacacttgtaattatactgaattatgtgacttttttaaatta 207  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  17753 accgacacttgtaattacactaaattatgtgattttttcaaatta 17797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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