View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1778_low_1 (Length: 1046)

Name: NF1778_low_1
Description: NF1778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1778_low_1
NF1778_low_1
[»] chr1 (1 HSPs)
chr1 (1-1018)||(46934919-46935957)
[»] chr5 (1 HSPs)
chr5 (948-1018)||(865193-865263)


Alignment Details
Target: chr1 (Bit Score: 785; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 1 - 1018
Target Start/End: Original strand, 46934919 - 46935957
Alignment:
Q  1 ttatattcgttatcagtnnnnnnntgttattgtaatcatgcatgataaggaatcctgttgtaatatttaaaattaagaagtcctttccatatatttagtt 100  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46934919 ttatattcgttatcagtaaaaaaatgttattgtaatcatgcatgataaggaatcctgttgtaatatttaaaattaagaagtcctttccatatatttagtt 46935018  T
Q  101 tttgcagataaagtatcttaatttttcactgaaaagaaaccaatttcttgaatttaaccatcaatatttaaattcttgtattcaagattaaatttgtcct 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46935019 tttgcagataaagtatcttaatttttcactgaaaagaaaacaatttcttgaatttaaccatcaatatttaaattcttgtagtcaagattaaatttgtcct 46935118  T
Q  201 tagttttgtacaacattctttctgttggtccgtctctgtcagcaataattcagtcctgtcttgctcagctggtttattttactggtgtcatgtttttgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46935119 tagttttgtacaacattctttctgttggtccgtctctgtcagcaataattcagtcctgtcttgctcagctggtttattttactggtgtcatgtttttgac 46935218  T
Q  301 agaagatttaggtagttagtttactttcacttttaccttagtgtggttttacttcaacttctcgcacatgtttagtacttagtaatgtcttgatcttcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46935219 agaagatttaggtagttagtttactttcacttttaccttagtgtggttttacttcaacttctcgcacatgtttagtacttagtaatgtcttgatcttcag 46935318  T
Q  401 gggnnnnnnnnnnnnnnnnggaatccaatatcagaaaattattttatatcccaattaatatgaaattagagtttaatagaagactaagaggctaaactct 500  Q
    |||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46935319 gggtttttttgaattttttggaatccaatatcagaaaattattttatatcccaattaatatgaaattagagtttaatagaagactaagaggctaaactct 46935418  T
Q  501 taannnnnnnctaagagtcgagcggcaaaaatcacacactctaaatgttgagaagtggcgaattgcaggtccggacccgcgccccaaaatatcaaatcac 600  Q
    |||       |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46935419 taatttttttctaagagtcgagcggcgaagatcacacactctaaatgttgagaagtggcgaattgcaggtccggacccgcgccccagaatatcaaatcac 46935518  T
Q  601 tatttagtcttttatcatttgagttgtacttacaggacaataggatgatacttc-----------atgaaagtccaactctcactttacagataaatttg 689  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  46935519 tatgtagtcttttatcatttgagttgtaattacaggacaataggatgatacttctatgacatataatgaaagtccaactctcactttacagataaatttg 46935618  T
Q  690 tgctatgtaaatgacgatgaaaataaaataaaatttagttttatagaaaaggcttctcagtcaacgaaattatttttatcagtactcttctaaatgttga 789  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46935619 agctatgtaaatgacgatgaaaataaaataaaatttagttttatagaaaaggcttctcagtcaacgaaattattcttatcagtactcttctaaatgttga 46935718  T
Q  790 atacagaatggattcaggagtcttctgcaaaagtaacagnnnnnnnnnnnnnctttt----------gaagtaatttgtaattcagaaacgcaacctggc 879  Q
    ||||||||| | |||||||||||||||||||||||||||              ||||          |||||||||||||||||||||||||||||||||    
T  46935719 atacagaataggttcaggagtcttctgcaaaagtaacagtttttttttttttttttttttttcttttgaagtaatttgtaattcagaaacgcaacctggc 46935818  T
Q  880 tttgccagtgaaaatccatctatcaataccgatttagatttcggccttcaaccggaattcatggttcaaaagtcaggctttcagcctcccgtctcaccga 979  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46935819 tttgccagtgaaaatccatctatcaataccgatgtagatttcggccttcaaccggaattcatggttcaaaagtcaggctttcagcctcccgtctcaccga 46935918  T
Q  980 ttcaaacagcacagaggataggtacctctcaccaaagct 1018  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46935919 ttcaaacagcacagaggataggtacctctcaccaaagct 46935957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 948 - 1018
Target Start/End: Complemental strand, 865263 - 865193
Alignment:
Q  948 aaagtcaggctttcagcctcccgtctcaccgattcaaacagcacagaggataggtacctctcaccaaagct 1018  Q
    ||||||| | ||||||| ||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||    
T  865263 aaagtcatggtttcagcttcccgtctcactgactcaaatagcacagaggacaggtacctctcgccaaagct 865193  T

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