View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1778_low_5 (Length: 292)
Name: NF1778_low_5
Description: NF1778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1778_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 13952429 - 13952145
Alignment:
| Q |
1 |
aacgccaactgcgaaacgaatcttgcattattatttgcttgcccagacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagta |
100 |
Q |
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| T |
13952429 |
aacgccaactgcgtaacgaatcttgcattattatttgcttgcccggacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagta |
13952330 |
T |
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| Q |
101 |
tatattttgcattgtcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcc |
200 |
Q |
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| T |
13952329 |
tatattttgcattgtcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcc |
13952230 |
T |
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| Q |
201 |
cttccataattttaaagatggtgacaaagtggactcacatagtcatgagtcatgtatcctatactagcggtaataatattattcgacat |
289 |
Q |
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| T |
13952229 |
cttccataattttaaagatggtgacaaggtggactcacatagtcatgagtcac----cctatactagcggtaataataatgttcgacat |
13952145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 14093636 - 14093352
Alignment:
| Q |
1 |
aacgccaactgcgaaacgaatcttgcattattatttgcttgcccagacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagta |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14093636 |
aacgccaactgcgtaacgaatcttgcattattatttgcttgcccggacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagta |
14093537 |
T |
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| Q |
101 |
tatattttgcattgtcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcc |
200 |
Q |
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| T |
14093536 |
tatattttgcattgtcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcc |
14093437 |
T |
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| Q |
201 |
cttccataattttaaagatggtgacaaagtggactcacatagtcatgagtcatgtatcctatactagcggtaataatattattcgacat |
289 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
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| T |
14093436 |
cttccataattttaaagatggtgacaaggtggactcacatagtcatgagtcac----cctatactagcggtaataataatgttcgacat |
14093352 |
T |
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