View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1778_low_7 (Length: 251)
Name: NF1778_low_7
Description: NF1778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1778_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 6817309 - 6817506
Alignment:
| Q |
44 |
tcctatgtgacatgacaaattgctagtttgtgaagatttctaaactata----agagaagacaaataattaaaaatggagaaatactctttaccttatac |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817309 |
tcctatgtgacatgacaaattgctagtttgtgaagatttctaaactatatataagagaagacaaataattaaaaatggagaaatactctttaccttatac |
6817408 |
T |
|
| Q |
140 |
cacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccatt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6817409 |
cacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcaccgttaccatt |
6817506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 6809183 - 6809366
Alignment:
| Q |
53 |
acatgacaaattgctagtttgtgaagatttctaaactataagagaagacaaataattaaaaatggagaaatactctttaccttataccacttgtattccc |
152 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| | || | |||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6809183 |
acatgacaaattgctagtttgtgaaaatttctaaattatagg-gagggtaaataactaaatatggagaaataatctttaccttataccacttgtattccc |
6809281 |
T |
|
| Q |
153 |
actgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccatt |
237 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6809282 |
actgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccatt |
6809366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 6831902 - 6832009
Alignment:
| Q |
130 |
taccttataccacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6831902 |
taccttataccacttgtattcccactgcatttgcattgcagcaccgggcacacgccaaggcttaaacctcctataagtagcagcaagatgcaatgcactg |
6832001 |
T |
|
| Q |
230 |
ttaccatt |
237 |
Q |
| |
|
|||||||| |
|
|
| T |
6832002 |
ttaccatt |
6832009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University