View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17790_low_4 (Length: 295)
Name: NF17790_low_4
Description: NF17790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17790_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 18705036 - 18705311
Alignment:
| Q |
1 |
aaagtaagcatagttgttaagatttacttatatttagacagaactccaaattactagaaacctttgctataagaaacagggggttactaaaaaatcctat |
100 |
Q |
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| T |
18705036 |
aaagtaagcatagttgttaagatttacttatatttagacagaactccaaattactagaaaccttttctataagaaacagggggttactaaaaaaacctat |
18705135 |
T |
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| Q |
101 |
ggttttgtaggaatttaattgcaattttagtcctcctatttgttcaatttatggattttggtcccctaatttttaaaccccgtaattttaatcccatagt |
200 |
Q |
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| T |
18705136 |
ggttttgtaggaatttaattgcaattttagtcctcctatttgttcaatttatggattttggtcccctaatttttaaaccccgtaattttaatcccatagt |
18705235 |
T |
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| Q |
201 |
tttttcaattttaggaattgaggccaacctttcaactgactctgatatggcacaattttaaatgacatggcatgaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18705236 |
tttttcaattttaggaattgaggccaacctttcaactgactctgatatggcacaattttaaatgacatggcatgaa |
18705311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 9487485 - 9487422
Alignment:
| Q |
113 |
atttaattgcaattttagtcctcctatttgttcaatttatggattttggtcccctaatttttaaa |
177 |
Q |
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| T |
9487485 |
atttaattgcaattttagtcc-cccatttaatcaatttttggattttagtcctccaatttttaaa |
9487422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 15742081 - 15742356
Alignment:
| Q |
1 |
aaagtaagcatagttgttaagatttacttatatttagacagaactccaaattactagaaacctttgctataagaaacagggggttactaaaaaatcctat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
15742081 |
aaagtaagcatagttgttaagatttacttatatttagacagaactccaaattactagaaaccttttctataagaaacagggggttactaaaaaaacctat |
15742180 |
T |
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| Q |
101 |
ggttttgtaggaatttaattgcaattttagtcctcctatttgttcaatttatggattttggtcccctaatttttaaaccccgtaattttaatcccatagt |
200 |
Q |
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| T |
15742181 |
ggttttgtaggaatttaattgcaattttagtcctcctatttgttcaatttatggattttggtcccctaatttttaaaccccgtaattttaatcccatagt |
15742280 |
T |
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| Q |
201 |
tttttcaattttaggaattgaggccaacctttcaactgactctgatatggcacaattttaaatgacatggcatgaa |
276 |
Q |
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| T |
15742281 |
tttttcaattttaggaattgaggccaacctttcaactgactctgatatggcacaattttaaatgacatggcatgaa |
15742356 |
T |
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