View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_high_10 (Length: 340)
Name: NF17791_high_10
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 35336107 - 35335782
Alignment:
| Q |
1 |
gaatcaattaaatttaagaaaaattgtttgtcatgaccaaaaattgcaatgattatggtgatcagctcctatataaatcaagtctcacactcggtcactc |
100 |
Q |
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| T |
35336107 |
gaatcaattaaatttaagaaaaattgtttgtcatgaccaaaaattgcaatgattatggtgatcagctcctatataaatcaagtctcacactcggtcactc |
35336008 |
T |
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| Q |
101 |
tcacaacatcatcccttcctttctcatttcctctctttctaggttattttctcttgcaaagaaaatggccaacactcttgcaatgttgctactcttactc |
200 |
Q |
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| T |
35336007 |
tcacaacatcatcccttcctctctcatttcctctctttctaggttattttctcttacaaagaaaatggccaaaactcttgcaatgttgctactcttactc |
35335908 |
T |
|
| Q |
201 |
caattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacaccacttcacccaccggctaaatcgcatcaccactaccatcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
35335907 |
caattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacacaacttcacccaccggctaaatcccctcaccactatcatcaca |
35335808 |
T |
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| Q |
301 |
atccttcaccaaccccttctcgttcc |
326 |
Q |
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| T |
35335807 |
atccttcaccaaccccttctcgttcc |
35335782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 16591733 - 16591830
Alignment:
| Q |
180 |
gcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacaccacttcacccaccggctaa |
277 |
Q |
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| T |
16591733 |
gcaatgttgctactcttactccaattaatttctttcaatgtatttggtgaagaacttgaatcccttcacgaaccaacaccacttcatccatcggctaa |
16591830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 16602303 - 16602400
Alignment:
| Q |
180 |
gcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacaccacttcacccaccggctaa |
277 |
Q |
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| T |
16602303 |
gcaatgttgctactctttctccaattgatttctttcaatgtatttgctgaagaacttgaatctcttcatgaaccaacaccacttcatctaccggctaa |
16602400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 35327500 - 35327418
Alignment:
| Q |
163 |
aaatggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctctt |
245 |
Q |
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| T |
35327500 |
aaatggctaaaacccttgcaatgttgctactcttactccaactcatctctttcactacatttgcagaagagcttgaaactctt |
35327418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 5341769 - 5341854
Alignment:
| Q |
132 |
tctctttctaggttattttctcttgcaaagaaa-atggccaacactcttgcaatgttgctactcttactccaattaacctcgttca |
216 |
Q |
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|||||||| |||| ||||||||| || ||||| |||||||| ||||| ||| | |||||||||||||||||| ||||||| |||| |
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| T |
5341769 |
tctctttcaaggtcgttttctcttacatagaaatatggccaaaactctagcatttttgctactcttactccaactaacctctttca |
5341854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35336139 - 35336108
Alignment:
| Q |
1 |
gaatcaattaaatttaagaaaaattgtttgtc |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35336139 |
gaatcaattaaatttaagaaaaattgtttgtc |
35336108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 51457443 - 51457504
Alignment:
| Q |
178 |
ttgcaatgttgctactcttactccaattaa---cctcgttcattgcatttgctgaagagctt |
236 |
Q |
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|||||||||||||||||||||| ||| ||| |||| ||||||||||||||| |||||||| |
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| T |
51457443 |
ttgcaatgttgctactcttacttcaactaacctcctctttcattgcatttgctcaagagctt |
51457504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 41525338 - 41525283
Alignment:
| Q |
192 |
ctcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttca |
247 |
Q |
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| T |
41525338 |
ctcttactccaaataacctccttcatagcatttgctgaagagctagaaactcttca |
41525283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 3545767 - 3545681
Alignment:
| Q |
147 |
ttttctcttgcaaagaaaa-tggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaaga |
232 |
Q |
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||||||||||||||||||| ||||||| ||||| ||| | || ||||| |||||||| || ||| |||| ||||||||||||||| |
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| T |
3545767 |
ttttctcttgcaaagaaaaatggccaaaactctagcatttttactacttctactccaactagcctatttcactgcatttgctgaaga |
3545681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 3549517 - 3549431
Alignment:
| Q |
147 |
ttttctcttgcaaagaaaa-tggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaaga |
232 |
Q |
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| T |
3549517 |
ttttctcttgcaaagaaaaatggccaaaactctagcatttttactacttctactccaactagcctatttcactgcatttgctgaaga |
3549431 |
T |
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