View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_high_13 (Length: 325)
Name: NF17791_high_13
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 41729156 - 41728855
Alignment:
| Q |
18 |
cctccaaggactacggtggttgggaatccggcaaaattgattggagggaagaataatcctattaaacttgataagattcctagccacactatggaccatg |
117 |
Q |
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| T |
41729156 |
cctccaaggactacggtggttgggaatccggcaaaattgattggagggaagaataatcctattaaacttgataagattcctagccacactatggaccatg |
41729057 |
T |
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| Q |
118 |
ttgcacatatttctgagttttatgattatgttatctagagtataggcttgaannnnnnnnnnnnnnnnnnnatgtttggaaattcagaattgagttattt |
217 |
Q |
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| T |
41729056 |
ttgcacatatttctgagttttatgattatgttatctagagtataggcttgaa-aaaattgtttgcagttttatgtttggaaattcagaattgagttattt |
41728958 |
T |
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| Q |
218 |
aaatgtgagggtccttgtttgttatgtaagagagaatcttggttctcctgctttgctaacagtaataaatgtgcaatgtgatcaaagtgtagtctgtgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
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| T |
41728957 |
aaatgtgagggtccttgtttgttatgtaagagagaatcttggttctcctgctttgctaacagtaataaatgtgcaatgtgatcatagtgtagtttgtgtt |
41728858 |
T |
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| Q |
318 |
gct |
320 |
Q |
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||| |
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| T |
41728857 |
gct |
41728855 |
T |
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