View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_high_15 (Length: 285)
Name: NF17791_high_15
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 4010141 - 4010397
Alignment:
| Q |
12 |
aagcaaaggtgtgggaaacaaaagctacctacatacatgttaaagttgaacagtgacatgcaaaacattaactaatcgccaaggcattgaaatctctgaa |
111 |
Q |
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| T |
4010141 |
aagcaaaggtgtgggaaacaaaagctacctacatacatgttaaagttgaacagtggcatgcaaaacattaactaatcgccaaggcattgaaatctctgaa |
4010240 |
T |
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| Q |
112 |
tgcataactagatgaaatataaattgatannnnnnnatagataaattatgagtaacatcattttcacatagctccttcc-aaaaattcaaaatctagcct |
210 |
Q |
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| T |
4010241 |
tgcataactagatgaaatataaattgatatttttttatagataaattatgagtaacatcattttcacatagctccttccaaaaaattcaaaatctagcct |
4010340 |
T |
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| Q |
211 |
ttcgagaagatatttaaaaaatagataaaataaaatgcaacattttaacgtaagatc |
267 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4010341 |
ttagagaagatatttaaaaaatagataaaataaaatgcaacattttaacgtaagatc |
4010397 |
T |
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