View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17791_high_7 (Length: 370)

Name: NF17791_high_7
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17791_high_7
NF17791_high_7
[»] chr1 (9 HSPs)
chr1 (8-122)||(4015229-4015343)
chr1 (249-298)||(21855820-21855869)
chr1 (249-302)||(4015353-4015406)
chr1 (39-122)||(4570658-4570741)
chr1 (16-77)||(21855725-21855786)
chr1 (15-71)||(4017083-4017139)
chr1 (249-298)||(4570561-4570610)
chr1 (248-296)||(4017168-4017216)
chr1 (249-302)||(10218605-10218658)
[»] chr5 (2 HSPs)
chr5 (249-298)||(24331336-24331385)
chr5 (16-77)||(24331241-24331302)
[»] chr7 (2 HSPs)
chr7 (18-75)||(29866911-29866968)
chr7 (21-74)||(29880931-29880984)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 4015343 - 4015229
Alignment:
Q  8 gacatcatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015343 gacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagt 4015244  T
Q  108 ggtactataaactgg 122  Q
    |||||||||||||||    
T  4015243 ggtactataaactgg 4015229  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21855869 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 21855820  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 4015406 - 4015353
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg 302  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  4015406 ctttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctg 4015353  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 4570658 - 4570741
Alignment:
Q  39 ggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 122  Q
    |||| ||||||||||||||| |||||||||||||||  |||||||| |||| ||| ||||| ||||||||| ||| | ||||||    
T  4570658 ggtgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttgagtggcactgtgaactgg 4570741  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
Q  16 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 77  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 21855725  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4017139 - 4017083
Alignment:
Q  15 tcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagtttt 71  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||    
T  4017139 tcagaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt 4017083  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 4570561 - 4570610
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 298  Q
    ||||| ||||||||| |||||||||| || ||||||||||||||||||||    
T  4570561 ctttggctttggatgtgataattcaaacgaaacttataaagtggtggcgt 4570610  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 4017216 - 4017168
Alignment:
Q  248 gctttgcctttggatgcgataattcaaccggaacttataaagtggtggc 296  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  4017216 gctttgcatttggatgtgataattcaactgcaacttataaagtggtggc 4017168  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 10218605 - 10218658
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg 302  Q
    |||||| |||||||| | ||||||||||||||  | ||||||||||||||||||    
T  10218605 ctttgcatttggatgtgttaattcaaccggaagctttaaagtggtggcgttctg 10218658  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24331385 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 24331336  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
Q  16 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 77  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 24331241  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
Q  18 gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg 75  Q
    ||||||| ||||||||| || |||| ||||  ||||||||| ||||||||||||||||    
T  29866911 gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg 29866968  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
Q  21 gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct 74  Q
    |||| |||||||||  | |||| ||||||||||||||| |||||||||||||||    
T  29880931 gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

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