View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_high_8 (Length: 366)
Name: NF17791_high_8
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 38630444 - 38630107
Alignment:
| Q |
19 |
ttatccacgcatgtggttccacatggtaagatgtaaatttaaatgtaactgtatttttaccttctttgtatcatcagcagcagctaaaactttcttcctc |
118 |
Q |
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| T |
38630444 |
ttatccacgcatgtggttccacatggtaagatgtaaatttaaatgtaactgtatttttaccttctttgtatcatcagcagcagctaaagctttcttcctc |
38630345 |
T |
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| Q |
119 |
taacaggtggccatacccatttcttgagcttaatattccatgggctcccttatggtaagatatactattaacatacaaatgccatgtcttctccattttt |
218 |
Q |
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| T |
38630344 |
taacaggtggccatacccatttcttgagcttaatattccatgggctcccttatggtaagatatactattaacatacaaatgccatgtcttctccattttt |
38630245 |
T |
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| Q |
219 |
ctttctatacaaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcatt |
318 |
Q |
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| T |
38630244 |
ctttctataccaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcatt |
38630145 |
T |
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| Q |
319 |
gatagtgaaaaccaaaatcaatattcttcacaggttct |
356 |
Q |
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| T |
38630144 |
gatagtgaaaaccaaaatcaatattcttcacagattct |
38630107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 38695745 - 38695825
Alignment:
| Q |
245 |
tcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaa |
328 |
Q |
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| T |
38695745 |
tcaccaatgcatcgtgtctatagg---atctgccttgcgctagttcacataccctgctacgacatgtatttattgatagtgaaa |
38695825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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