View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17791_low_1 (Length: 735)

Name: NF17791_low_1
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17791_low_1
NF17791_low_1
[»] chr7 (12 HSPs)
chr7 (1-639)||(41760142-41760772)
chr7 (637-719)||(41760004-41760086)
chr7 (286-376)||(37928265-37928355)
chr7 (288-379)||(23142707-23142799)
chr7 (319-373)||(11736227-11736281)
chr7 (342-376)||(18221174-18221208)
chr7 (319-379)||(16685729-16685790)
chr7 (319-379)||(17659965-17660026)
chr7 (319-379)||(3624279-3624339)
chr7 (342-373)||(1703935-1703966)
chr7 (318-373)||(7833805-7833860)
chr7 (288-379)||(45907089-45907179)
[»] chr5 (2 HSPs)
chr5 (290-379)||(7319227-7319316)
chr5 (341-379)||(14044735-14044773)
[»] chr4 (4 HSPs)
chr4 (291-379)||(20775042-20775130)
chr4 (335-379)||(31152188-31152232)
chr4 (318-379)||(27284069-27284130)
chr4 (318-379)||(52837322-52837383)
[»] chr8 (1 HSPs)
chr8 (317-420)||(3137396-3137499)
[»] chr3 (5 HSPs)
chr3 (290-379)||(24344800-24344889)
chr3 (289-379)||(36436552-36436642)
chr3 (287-376)||(48338779-48338868)
chr3 (286-376)||(49543170-49543260)
chr3 (318-373)||(635766-635821)
[»] chr6 (2 HSPs)
chr6 (316-379)||(10008188-10008251)
chr6 (319-373)||(19418593-19418647)
[»] chr2 (4 HSPs)
chr2 (292-379)||(4978807-4978894)
chr2 (292-379)||(4996715-4996802)
chr2 (342-373)||(36622124-36622155)
chr2 (319-376)||(13738453-13738510)
[»] chr1 (2 HSPs)
chr1 (323-379)||(46295926-46295982)
chr1 (319-376)||(13969157-13969214)


Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 41760772 - 41760142
Alignment:
Q  1 gctgcatatagtacgtagagttatatggtaggagaaatcatgatgattttgttagtgaaaaagaaaagatgtgagaagagttgagacagaggagtagggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760772 gctgcatatagtacgtagagttatatggtaggagaaatcatgatgattttgttagtgaaaaagaaaagatgtgagaagagttgagacagaggagtagggt 41760673  T
Q  101 taaacataaagcagaaatgttttgggtgggatatataatattcataggaaggaagaatcatggtaataaattggtgtgatcttattgccaatagtattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760672 taaacataaagcagaaatgttttgggtgggatatataatattcataggaaggaagaatcatggtaataaattggtgtgatcttattgccaatagtattca 41760573  T
Q  201 aactcttcccataatcatttccgagtatttgcatcgcatgcaatatttttcatttcctttattggtttctcttttttacaatatgtataaggagaatgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  41760572 aactcttcccataatcatttccgagtatttgcatcgcatgcaatatttttcatttccttcattggtttctcttttttacaatatgttttaggagaatgtt 41760473  T
Q  301 aaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnncttacattt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  41760472 aaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgataaaaaataaaaacttacattt 41760373  T
Q  401 tcaagacataatttctatttttagtttctttaactagtgtcccagagacacatgttaataaaaccctatgtttaatagtttctacactatggtatatgca 500  Q
    | |||||||||||||||||||||||||||||||| |||| ||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41760372 ttaagacataatttctatttttagtttctttaaccagtgcccctgaaacacaggttaacaaaaccctatgtttaatagtttctacactatggtatatgca 41760273  T
Q  501 aatataccatttttatgcttttaatctgtgtagaaagttacttggaaaatatttattgtaatattcattttagtccggttttttaagaggaaaaaacaaa 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        
T  41760272 aatataccatttttatgcttttaatctgtgtagaaagttacttggaaaatatttattgtaatattcattttagtccagttttttaagaggaaaaaa---- 41760177  T
Q  601 caataataactaacttccttataaatcacaagacgtgcc 639  Q
        || ||||||||||||||| ||||||||||||||||    
T  41760176 ----aaaaactaacttccttatgaatcacaagacgtgcc 41760142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 637 - 719
Target Start/End: Complemental strand, 41760086 - 41760004
Alignment:
Q  637 gccaagattacaaagtcgacaatcctaaacaaagtaatggactatcttaccaagaatgaacatctacaacggaaatcaatcag 719  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  41760086 gccaagattacaaagtcgacaatcctaaacaaagtaatgggctagtttaccaagaatgaacatctacaacggaaatcaatcag 41760004  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 37928265 - 37928355
Alignment:
Q  286 tataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 376  Q
    |||| ||| |||| ||| |||||| ||| ||||||||||||| |||||||||  | |||| |||||| |||||||||||||||||||||||    
T  37928265 tatatggaaaatgctaactagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactt 37928355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 23142799 - 23142707
Alignment:
Q  288 taaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaa-gttgtgtaataattacttgat 379  Q
    |||||||||||||||  ||||| ||| |  |||||||||| |||||||||  | |||| |||||| ||||| |||||||||||||||||||||    
T  23142799 taaggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgat 23142707  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 11736281 - 11736227
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 373  Q
    |||||||||||| ||||||  | ||||||||||||||||||| ||||||||||||    
T  11736281 attggttaagcagccaaaagaagtaagattttattaaaaagtggtgtaataatta 11736227  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 18221208 - 18221174
Alignment:
Q  342 taagattttattaaaaagttgtgtaataattactt 376  Q
    |||||||||||||||||||||||||||||||||||    
T  18221208 taagattttattaaaaagttgtgtaataattactt 18221174  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 16685729 - 16685790
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 16685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 17659965 - 17660026
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 17660026  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 3624339 - 3624279
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    ||||||||||||| ||||   | ||||||||||||||||||| |||||||||||| |||||    
T  3624339 attggttaagcattcaaaggaagtaagattttattaaaaagtggtgtaataattatttgat 3624279  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 373
Target Start/End: Complemental strand, 1703966 - 1703935
Alignment:
Q  342 taagattttattaaaaagttgtgtaataatta 373  Q
    ||||||||||||||||||||||||||||||||    
T  1703966 taagattttattaaaaagttgtgtaataatta 1703935  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 7833860 - 7833805
Alignment:
Q  318 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 373  Q
    ||||||||||||| ||||||  | ||||||||||||||||||| ||| ||||||||    
T  7833860 cattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataatta 7833805  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 45907179 - 45907089
Alignment:
Q  288 taaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||||  |||||  |  ||| |||||||||||||  |||||||| |||| ||||||||||||||  |||||| ||||||||||    
T  45907179 taaggagaatgttaaccagtgtccccgggatattggttaagcat--aaaaagaagtaagtttttattaaaaagtaatgtaattattacttgat 45907089  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 7319227 - 7319316
Alignment:
Q  290 aggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||| ||||   ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7319227 aggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgat 7319316  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 14044773 - 14044735
Alignment:
Q  341 ataagattttattaaaaagttgtgtaataattacttgat 379  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  14044773 ataagtttttataaaaaagttgtgtaataattacttgat 14044735  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 20775042 - 20775130
Alignment:
Q  291 ggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||| ||||||||| | ||  ||||||||||||||||||||||  | |||| |||||| |||||||| ||||||||||| |||||    
T  20775042 ggagaatgctaaatagtgctccaaagacattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgat 20775130  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 31152232 - 31152188
Alignment:
Q  335 aaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||    
T  31152232 aaaagaataagattttattaaaaaattgtgttataattatttgat 31152188  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 27284069 - 27284130
Alignment:
Q  318 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||| |||||||||  |||||| |||||| ||||||||||| ||| |||| |||||    
T  27284069 cattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgat 27284130  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 52837383 - 52837322
Alignment:
Q  318 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    ||||||||||||||||||||  |  ||  |||||| ||||||||||||||||||||| ||||    
T  52837383 cattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaataattacgtgat 52837322  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 3137396 - 3137499
Alignment:
Q  317 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnncttacattttcaagacataatttct 416  Q
    |||||||||| ||||||||||  |||||| || ||| ||||||||||||||||||||||||||            ||||||||||||||||| |||||||    
T  3137396 acattggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttct 3137495  T
Q  417 attt 420  Q
    ||||    
T  3137496 attt 3137499  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 24344800 - 24344889
Alignment:
Q  290 aggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||| ||||| ||| || ||||||||||||||  |||||||| ||| |||| | ||||||||||||||||||||| |||||    
T  24344800 aggagaatgttaaacagtgtctcaggggcattggttaagcat-aaaaaagaagtaatatttaactaaaaagttgtgtaataattatttgat 24344889  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 36436552 - 36436642
Alignment:
Q  289 aaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||||  |||  |||||| ||| |||||| |||| ||||  ||||||||||||||||||||| ||| |||||||| |||||    
T  36436552 aaggagaatgttaaaccgtgcctcatgggcatgggttaaacatctaaaataaataagattttattaaaaagtagtgcaataattatttgat 36436642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 48338779 - 48338868
Alignment:
Q  287 ataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 376  Q
    |||||||||||| ||| ||||| |  | || || |||||||||||||||||  | |||| |||||| |||||||||||||||||||||||    
T  48338779 ataaggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactt 48338868  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 49543170 - 49543260
Alignment:
Q  286 tataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 376  Q
    ||||||||||||||||| ||||||   | ||||||||||||||||| ||||| || |||  ||| || |||||  ||||||||||||||||    
T  49543170 tataaggagaatgttaattagtgtcctaaggacattggttaagcattcaaaacgagtaaattttcatgaaaaaagtgtgtaataattactt 49543260  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 635821 - 635766
Alignment:
Q  318 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 373  Q
    ||||||||||||||||||||   ||||| ||||||| |||||||||||||| ||||    
T  635821 cattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcatta 635766  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 10008188 - 10008251
Alignment:
Q  316 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    ||||||||||||||| ||||||  | |||| |||||||||||||| ||||||| ||||||||||    
T  10008188 gacattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgat 10008251  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 19418593 - 19418647
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 373  Q
    |||||||||||||||||||  | |||||||||||||||||||  |||||||||||    
T  19418593 attggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 4978894 - 4978807
Alignment:
Q  292 gagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    ||||||| ||| ||||| | || | ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4978894 gagaatgataactagtgctacaagaacattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4978807  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 4996802 - 4996715
Alignment:
Q  292 gagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    ||||||| ||| ||||| | || | ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4996802 gagaatgataactagtgctacaagaacattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4996715  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 373
Target Start/End: Original strand, 36622124 - 36622155
Alignment:
Q  342 taagattttattaaaaagttgtgtaataatta 373  Q
    ||||||||||||||||||||||||||||||||    
T  36622124 taagattttattaaaaagttgtgtaataatta 36622155  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 13738510 - 13738453
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 376  Q
    |||||||||||||||||||  | |||| |||||| ||||| ||||||||| |||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactt 13738453  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 46295982 - 46295926
Alignment:
Q  323 gttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 379  Q
    |||||||||||||||  |||||| |||||| |||||||||||| || ||||||||||    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgat 46295926  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 13969214 - 13969157
Alignment:
Q  319 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 376  Q
    |||||||||||| ||||||  | |||| |||||| ||||| |||||||||||||||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattactt 13969157  T

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