View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_low_11 (Length: 364)
Name: NF17791_low_11
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 52109000 - 52108649
Alignment:
| Q |
1 |
aacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc |
100 |
Q |
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| T |
52109000 |
aacccaagattccaaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc |
52108901 |
T |
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| Q |
101 |
gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga |
200 |
Q |
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| T |
52108900 |
gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga |
52108801 |
T |
|
| Q |
201 |
aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat |
300 |
Q |
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| T |
52108800 |
aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat |
52108701 |
T |
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| Q |
301 |
tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
352 |
Q |
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| T |
52108700 |
tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
52108649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 44520272 - 44519922
Alignment:
| Q |
1 |
aacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
44520272 |
aacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgattcaaggtcgcaaagagaaactcgtttcgagggtcatcatcttc |
44520173 |
T |
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| Q |
101 |
gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520172 |
gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga |
44520073 |
T |
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| Q |
201 |
aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||| |
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| T |
44520072 |
aattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgtgagaaaaaacatgattcgtattttagggtatttataaaaaat |
44519973 |
T |
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| Q |
301 |
tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
352 |
Q |
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| T |
44519972 |
t-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
44519922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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