View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17791_low_15 (Length: 337)

Name: NF17791_low_15
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17791_low_15
NF17791_low_15
[»] chr1 (12 HSPs)
chr1 (1-331)||(47316255-47316586)
chr1 (105-331)||(47319824-47320050)
chr1 (208-328)||(47307046-47307166)
chr1 (128-276)||(47319634-47319782)
chr1 (1-87)||(47307097-47307183)
chr1 (181-327)||(47316177-47316323)
chr1 (181-274)||(47314438-47314531)
chr1 (1-54)||(47311172-47311225)
chr1 (1-54)||(47314516-47314569)
chr1 (220-328)||(47311133-47311241)
chr1 (1-40)||(47319765-47319804)
chr1 (245-311)||(47314699-47314765)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 47316255 - 47316586
Alignment:
Q  1 ttcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgatttacaacaacgtgatcgatcagcactcgaagatcgagcaatggcgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316255 ttcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgatttacaacaacgtgatcgatcagcactcgaagatcgagcaatggcgt 47316354  T
Q  101 ttttaacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316355 ttttaacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaag 47316454  T
Q  201 agttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316455 agttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttca 47316554  T
Q  301 ttggatggtgat-gaacaacaaggtgatgatg 331  Q
    |||||||||||| |||||||||||||||||||    
T  47316555 ttggatggtgatagaacaacaaggtgatgatg 47316586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 105 - 331
Target Start/End: Original strand, 47319824 - 47320050
Alignment:
Q  105 aacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagtt 204  Q
    ||||| |||||| ||| |||||  | |||||||||||||||   ||||||||||||||||| ||| ||||||| | ||||||||||||||| | ||||||    
T  47319824 aacagcagttaaagttgcatttccatataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagtt 47319923  T
Q  205 gtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattgg 304  Q
     ||||||||||| |||||||||||||||||||||||||| |||||||||  ||| ||||||| |  ||||||||||||||||||||||||||| ||||||    
T  47319924 ttcaaagaaggactgatggagttgtttaaagaccataaagatttacttttgggactcaacacttggttgccagagggacacaaaatctcacttccattgg 47320023  T
Q  305 atggtgatgaacaacaaggtgatgatg 331  Q
    |||||||||||||||||||||||||||    
T  47320024 atggtgatgaacaacaaggtgatgatg 47320050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 47307046 - 47307166
Alignment:
Q  208 aaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatg 307  Q
    ||||||||||||| ||||||||| ||||| ||||||  |||| ||||| ||||||||| ||||||||||   |||||  ||||||||||| |||||||||    
T  47307046 aaagaaggaatgacggagttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcacttccattggatg 47307145  T
Q  308 gtgatgaacaacaaggtgatg 328  Q
     ||||||||||| ||||||||    
T  47307146 atgatgaacaacgaggtgatg 47307166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 128 - 276
Target Start/End: Original strand, 47319634 - 47319782
Alignment:
Q  128 aagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagtt 227  Q
    ||||||||| |||||||||  |||| ||| |||||||||||  ||||| |   |||||||||||||||  ||||||  ||||||||||||| ||||||||    
T  47319634 aagataagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagtt 47319733  T
Q  228 gtttaaagaccataaaaatttactttcaggattcaacaccttcttgcca 276  Q
    ||| ||||| ||| || ||||| ||||| ||||||||| ||||||||||    
T  47319734 gttgaaagaacatcaagatttaatttcaagattcaacatcttcttgcca 47319782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 47307097 - 47307183
Alignment:
Q  1 ttcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgatttacaacaacgtgatcgatcagcactcgaagat 87  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| | ||||| ||| |||| ||||||||    
T  47307097 ttcaacatcttcttgccaccaggacaagaaatctcacttccattggatgatgatgaacaacgaggtgatggattagcattcgaagat 47307183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 327
Target Start/End: Original strand, 47316177 - 47316323
Alignment:
Q  181 gccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagg 280  Q
    |||||||||||||||  |||||| |||||||||||| | | ||||||||| ||||| ||| || ||||| ||| | ||||||||| ||||||||||   |    
T  47316177 gccaaaagaattgatagaagagtcgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccag 47316276  T
Q  281 gacacaaaatctcactttcattggatggtgatgaacaacaaggtgat 327  Q
    ||||  ||||||||||| ||||||||| ||||  ||||||| |||||    
T  47316277 gacatgaaatctcacttccattggatgatgatttacaacaacgtgat 47316323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 47314438 - 47314531
Alignment:
Q  181 gccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgc 274  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||| ||| || ||||| ||||| |||||| || ||||||||    
T  47314438 gccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgc 47314531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47311172 - 47311225
Alignment:
Q  1 ttcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat 54  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  47311172 ttcaacatcttcatgccatcaggacatgaaatctcacttccattggatgatgat 47311225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47314516 - 47314569
Alignment:
Q  1 ttcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat 54  Q
    |||| ||||||||||| ||||||||||||||| ||| ||||||||||| |||||    
T  47314516 ttcagcatcttcttgcaaccaggacatgaaatttcatttccattggataatgat 47314569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 47311133 - 47311241
Alignment:
Q  220 atggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtgatgaacaac 319  Q
    |||||||| |||||||| ||| || ||||  ||||| ||||||||| |||| |||||   |||||  ||||||||||| ||||||||| |||| |||||     
T  47311133 atggagttatttaaagaacatcaatatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatgatgatcaacaag 47311232  T
Q  320 aaggtgatg 328  Q
    || ||||||    
T  47311233 aaagtgatg 47311241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47319765 - 47319804
Alignment:
Q  1 ttcaacatcttcttgccaccaggacatgaaatctcacttc 40  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  47319765 ttcaacatcttcttgccaccaggagatgaaatcccacttc 47319804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 47314699 - 47314765
Alignment:
Q  245 atttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtga 311  Q
    |||||||||  ||| ||||||| |||||||||  |||||||||||||||| || |||||| ||||||    
T  47314699 atttacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtga 47314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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