View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_low_16 (Length: 329)
Name: NF17791_low_16
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 3702978 - 3702651
Alignment:
| Q |
1 |
gagttacaactctgaatctaaccatacatcttatcttatacaaagccacttcaacattatgtaaataaa----caaacagcaaaaaataaaatcatgttc |
96 |
Q |
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| T |
3702978 |
gagttacaactctgaatctaaccatacatcttatcttatacaaagccacatcaacattatgtaaataaataaacaaacagcaaaaaataaaatcatgttc |
3702879 |
T |
|
| Q |
97 |
tcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
3702878 |
tcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaa |
3702779 |
T |
|
| Q |
197 |
aagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702778 |
aagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttca |
3702679 |
T |
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| Q |
297 |
ggatccattttctcgcctttcatctcac |
324 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
3702678 |
ggatccattttctcacctttcatctcac |
3702651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 3699231 - 3698963
Alignment:
| Q |
52 |
caacattatgtaaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaat |
151 |
Q |
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|
| T |
3699231 |
caacattatgtaaataaaca----gcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaat |
3699136 |
T |
|
| Q |
152 |
cttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
251 |
Q |
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||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3699135 |
cttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
3699036 |
T |
|
| Q |
252 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcac |
324 |
Q |
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| T |
3699035 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcac |
3698963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 3699283 - 3699251
Alignment:
| Q |
24 |
atacatcttatcttatacaaagccacttcaaca |
56 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3699283 |
atacatcttatcttatacaaagccacttcaaca |
3699251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
255 |
tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
310 |
Q |
| |
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||||||| |||||||||||| | || ||||| | |||||||||||||||||||||| |
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|
| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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