View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_low_18 (Length: 326)
Name: NF17791_low_18
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 312
Target Start/End: Original strand, 40669666 - 40669958
Alignment:
| Q |
23 |
cataaatgatcaatgaaagggtgtttagctacttaggtacaaatgaaagagcatggaaattacatcgcgttttgcttttacttatatttagaaatggaga |
122 |
Q |
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| T |
40669666 |
cataaatgatcaatgaaagggtgtttagctacttaggtacaaatgaaagagcatggaaattacatcgcgttttgcttttacttatatttagaaatggaga |
40669765 |
T |
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| Q |
123 |
gtaaaatgcccaggtttacaaatgaaggtagttgatagtgatggacatgtgctcgctagtttggttcgtcattacatatgaaattttgagcattttgg-- |
220 |
Q |
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| T |
40669766 |
gtaaaatgcccaggtttacaaatgaaggtagttgatagtgatggacatgtgctcgctagtttggttcgtcattacatatgaaattttgagcattttggaa |
40669865 |
T |
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| Q |
221 |
-nnnnnnnntattaggtatttaattaagcacttactagcaaattctaatcaaggcaaagaaatacattaaataccgtactagttagagcatat |
312 |
Q |
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| T |
40669866 |
agaaaaaaaaattaggtatttaattaagcacttactagcaaattctaatcaaggcaaagaaatacattaaataccgtactagttagagcatat |
40669958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 40663465 - 40663509
Alignment:
| Q |
230 |
attaggtatttaattaagcacttactagcaaattctaatcaaggc |
274 |
Q |
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| T |
40663465 |
attaggaaattaattaagcacttactagcaaatgctgatcaaggc |
40663509 |
T |
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