View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17791_low_23 (Length: 282)
Name: NF17791_low_23
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 2620741 - 2620890
Alignment:
| Q |
116 |
aatggttaataatattcattttacattttaaattaaatggttaatatatatgtatgaatgtatgatgcctcgtagttgatattgagcagaatgtttttat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2620741 |
aatggttaataatattcattttacattttaaaataaatggttaatatatatgtgtgaatgtatgatgcctcgtagttgatattgagcagaacgtttttat |
2620840 |
T |
|
| Q |
216 |
ttattcttctacaaacggttagaatgttcttgtatggtatatttgcatat |
265 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2620841 |
ttattcttctacaaaaggttagaatgttcttgtatggtatatttgcatat |
2620890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 2620572 - 2620716
Alignment:
| Q |
13 |
aaaataagagattgactcctctaaagtggggaaaatgtaaagtgaacaaatcaagagatgtctttttgatatggttacaatgttaacttttaatttgtta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2620572 |
aaaataagagattgactcctctaaagtggggaaaatgtaaattgaaaaaatcaagagatgtctttttgatatggttacaatgttaacttgtaatttgtta |
2620671 |
T |
|
| Q |
113 |
atcaatggttaataatattcattttacattttaaattaaatggtt |
157 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2620672 |
atcaatgattaataatattcattttacattttaaagtgaatggtt |
2620716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University