View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17791_low_3 (Length: 695)

Name: NF17791_low_3
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17791_low_3
NF17791_low_3
[»] chr3 (13 HSPs)
chr3 (17-440)||(2442171-2442603)
chr3 (527-633)||(2442665-2442771)
chr3 (106-144)||(763341-763379)
chr3 (113-158)||(1889363-1889409)
chr3 (112-149)||(1930950-1930987)
chr3 (113-149)||(1897452-1897488)
chr3 (113-149)||(1906898-1906934)
chr3 (113-149)||(2932152-2932188)
chr3 (113-158)||(1890829-1890875)
chr3 (112-156)||(12218278-12218323)
chr3 (114-185)||(956622-956691)
chr3 (113-149)||(1936761-1936797)
chr3 (494-526)||(2442600-2442632)
[»] chr4 (2 HSPs)
chr4 (113-157)||(22671911-22671956)
chr4 (112-148)||(20019551-20019587)
[»] chr5 (1 HSPs)
chr5 (115-158)||(1427464-1427508)


Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 2442171 - 2442603
Alignment:
Q  17 ttgttgaagttgacaggggcgtttaattcgtttgtttacgattccaggagtggtactttcaagtctagtgattttcaaaacatcttaggagtctctgttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2442171 ttgttgaagttgacaggggcgtttaattcgtttgtttacgattccaggagtggtactttaaagtctagtgattttcaaaacatcttaggagtctctgttg 2442270  T
Q  117 agagtttaatatcaccttgttcttaatgctagatgtagatgtagcaatatgccactcgagcatgagatttaactgatgacttcc---------tggattt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  2442271 agagtttaatatcaccttgttcttaatgctagatgtagatgtagcaatatgccactcgagcatgagatttaactgatgacttctatgacttcttggattt 2442370  T
Q  208 ttgttagctaatggttggttgttgaccttgcatcttgagacattgttgttattttcatctgtattatttgtttgttagttctctcatcgtgcattacatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2442371 ttgttagctaatggttggttgttgaccttgcatcttgagacattgttgttattttcatctgtattatttttttgttagttctctcatcgtgcattacatt 2442470  T
Q  308 gttatagttcacaaccatgcattgagttttatggttttgcatttgattttgtatgatcctaataaagacttggatgtattgcgaaggcactattactttt 407  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  2442471 gttatagttcacaaccatgcattgagttttatggttttacatttgattttgtatgatcctaataaagacttggatgtattgcaaaggcaatattactttt 2442570  T
Q  408 tgaaatatctgcgcaaggatatgcacatattta 440  Q
    |||||||||||||||||||||||||||||||||    
T  2442571 tgaaatatctgcgcaaggatatgcacatattta 2442603  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 527 - 633
Target Start/End: Original strand, 2442665 - 2442771
Alignment:
Q  527 tggaatacgaagactattttgatattttttactatataatactttgttttctttgaattgtgtctcagatggtgccttcttgaattcatattctaatgtc 626  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442665 tggaatacgaagacaattttgatattttttactatataatactttgttttctttgaattgtgtctcagatggtgccttcttgaattcatattctaatgtc 2442764  T
Q  627 aatttaa 633  Q
    |||||||    
T  2442765 aatttaa 2442771  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 763379 - 763341
Alignment:
Q  106 agtctctgttgagagtttaatatcaccttgttcttaatg 144  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  763379 agtctatgttgagagtttaatatcaccttgttcttaatg 763341  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 1889409 - 1889363
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatgt 158  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  1889409 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgt 1889363  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 1930987 - 1930950
Alignment:
Q  112 tgttgagagtttaatatcaccttgttcttaatgctaga 149  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1930987 tgttgagagtttgatatcaccttgttcttaatgctaga 1930950  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 1897488 - 1897452
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctaga 149  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1897488 gttgagagtttgatatcaccttgttcttaatgctaga 1897452  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 1906934 - 1906898
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctaga 149  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1906934 gttgagagtttgatatcaccttgttcttaatgctaga 1906898  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 2932152 - 2932188
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctaga 149  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2932152 gttgagagtttgatatcaccttgttcttaatgctaga 2932188  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 1890875 - 1890829
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatgt 158  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  1890875 gttgagagtttgatatcgccttgttcttaatgctagaatgtagatgt 1890829  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 12218278 - 12218323
Alignment:
Q  112 tgttgagagtttaatatcaccttgttcttaatgcta-gatgtagat 156  Q
    |||||||||||| |||||||||||||||||||| || |||||||||    
T  12218278 tgttgagagtttgatatcaccttgttcttaatgttaggatgtagat 12218323  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 956622 - 956691
Alignment:
Q  114 ttgagagtttaatatcaccttgttcttaatgctagatgtagatgtagcaatatgccactcgagcatgagatt 185  Q
    |||| ||||| ||||||||||||||||||||||  ||||| |||| |  ||||||| || ||||||||||||    
T  956622 ttgaaagtttgatatcaccttgttcttaatgct--atgtaaatgtggtgatatgcctcttgagcatgagatt 956691  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 1936797 - 1936761
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctaga 149  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  1936797 gttgagagtttgatatcaccttgtttttaatgctaga 1936761  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 526
Target Start/End: Original strand, 2442600 - 2442632
Alignment:
Q  494 tttatcagacatgtggttctttgtgaccgttag 526  Q
    ||||||||||||||||||||||||||| |||||    
T  2442600 tttatcagacatgtggttctttgtgactgttag 2442632  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 22671956 - 22671911
Alignment:
Q  113 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatg 157  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  22671956 gttgagagtttaatatcaccttgttcttagtgctagtatgtagatg 22671911  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 20019587 - 20019551
Alignment:
Q  112 tgttgagagtttaatatcaccttgttcttaatgctag 148  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  20019587 tgttgagagtttgatatcaccttgtttttaatgctag 20019551  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 1427508 - 1427464
Alignment:
Q  115 tgagagtttaatatcaccttgttcttaatgct-agatgtagatgt 158  Q
    ||||||||||||||||||||||||||| || | ||||||||||||    
T  1427508 tgagagtttaatatcaccttgttcttattgttaagatgtagatgt 1427464  T

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