View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17791_low_4 (Length: 643)

Name: NF17791_low_4
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17791_low_4
NF17791_low_4
[»] chr3 (10 HSPs)
chr3 (34-643)||(11967862-11968446)
chr3 (29-316)||(5004687-5004973)
chr3 (28-313)||(46404537-46404813)
chr3 (117-423)||(16975136-16975450)
chr3 (1-90)||(16975453-16975542)
chr3 (210-314)||(16475277-16475381)
chr3 (271-357)||(7337291-7337377)
chr3 (146-198)||(8730913-8730966)
chr3 (146-198)||(9082800-9082853)
chr3 (226-315)||(9104172-9104261)
[»] chr6 (12 HSPs)
chr6 (1-315)||(32450201-32450514)
chr6 (1-313)||(23260517-23260828)
chr6 (25-314)||(25005143-25005432)
chr6 (28-312)||(34636188-34636457)
chr6 (29-140)||(10751527-10751637)
chr6 (261-410)||(10751623-10751772)
chr6 (209-357)||(13777247-13777393)
chr6 (213-312)||(26182602-26182700)
chr6 (476-642)||(10751779-10751946)
chr6 (148-332)||(24992398-24992578)
chr6 (238-315)||(11166587-11166664)
chr6 (9-47)||(26182570-26182608)
[»] chr1 (12 HSPs)
chr1 (1-313)||(35761988-35762302)
chr1 (84-311)||(9537377-9537602)
chr1 (272-527)||(8421359-8421615)
chr1 (178-306)||(37667265-37667393)
chr1 (2-315)||(16074708-16075014)
chr1 (28-156)||(37667144-37667271)
chr1 (191-357)||(21264718-21264884)
chr1 (271-332)||(43407964-43408025)
chr1 (249-313)||(338060-338123)
chr1 (209-312)||(6835953-6836056)
chr1 (304-342)||(2269840-2269878)
chr1 (238-314)||(16110591-16110667)
[»] scaffold0413 (2 HSPs)
scaffold0413 (28-402)||(8749-9125)
scaffold0413 (524-642)||(8562-8680)
[»] chr7 (12 HSPs)
chr7 (28-312)||(15873911-15874186)
chr7 (1-304)||(21491432-21491739)
chr7 (84-313)||(22077633-22077860)
chr7 (1-313)||(18367266-18367576)
chr7 (278-527)||(49170491-49170741)
chr7 (103-314)||(48576331-48576540)
chr7 (226-527)||(12196729-12197026)
chr7 (172-357)||(48654339-48654522)
chr7 (271-357)||(10289388-10289474)
chr7 (177-314)||(9993290-9993427)
chr7 (226-331)||(12911867-12911970)
chr7 (276-314)||(7503908-7503946)
[»] chr5 (5 HSPs)
chr5 (1-313)||(4557908-4558222)
chr5 (152-312)||(536731-536891)
chr5 (28-232)||(536895-537090)
chr5 (226-314)||(27026620-27026708)
chr5 (273-325)||(38000833-38000885)
[»] chr4 (6 HSPs)
chr4 (1-280)||(49499045-49499324)
chr4 (84-314)||(28969204-28969432)
chr4 (226-332)||(40458887-40458992)
chr4 (227-315)||(41868568-41868655)
chr4 (209-313)||(69251-69352)
chr4 (337-423)||(42900719-42900805)
[»] chr2 (11 HSPs)
chr2 (162-357)||(32735391-32735586)
chr2 (303-642)||(22403415-22403757)
chr2 (278-402)||(41340858-41340981)
chr2 (209-314)||(12774954-12775057)
chr2 (345-423)||(36732564-36732642)
chr2 (209-314)||(28267692-28267794)
chr2 (226-332)||(18292882-18292986)
chr2 (120-294)||(29270654-29270827)
chr2 (249-313)||(40447433-40447496)
chr2 (478-574)||(41341000-41341098)
chr2 (81-313)||(1193599-1193831)
[»] scaffold1838 (1 HSPs)
scaffold1838 (90-268)||(221-397)
[»] chr8 (2 HSPs)
chr8 (146-410)||(35839004-35839268)
chr8 (209-333)||(22816487-22816609)
[»] scaffold0120 (1 HSPs)
scaffold0120 (238-315)||(2645-2722)
[»] scaffold0013 (1 HSPs)
scaffold0013 (209-331)||(243170-243292)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 34 - 643
Target Start/End: Original strand, 11967862 - 11968446
Alignment:
Q  34 tcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaa--catatatgcatagaaaaataaaataaatgtcattccacataac 131  Q
    |||||| ||||||||||||||||| |  ||||||| |||  ||||||||||||||  ||||||||||||  ||||||||||||||||||||| ||  |||    
T  11967862 tcatttctttagtttatcaacaaaat--aacacttctttcccaataccacaaaaaaacatatatgcatatcaaaataaaataaatgtcattctacggaac 11967959  T
Q  132 attatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt--tct 229  Q
    ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||  |||    
T  11967960 atttt-atacacacatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagattttttgtcttct 11968058  T
Q  230 tttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcc 329  Q
    ||||||      | ||||||||||||      ||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||    
T  11968059 tttcaa------agaatctctacctc------ataacatcatcctagtacttagtatggacgtatgggaaaaaa-cccttacctcgagaacttttcttcc 11968145  T
Q  330 tagccgaactctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaagaagat 429  Q
    ||||| |||||||||||||||||||||||| ||||          |  |||||||||||| |||| ||||||||||||||| ||    |||||||| |||    
T  11968146 tagccaaactctaaaccacctcaaactcacagctaa---------atgttgtctcgcactgcagggattattttgacgatccga----tgaaaagaggat 11968232  T
Q  430 ttacatgttggaaacacgttgaccaaaaattagctcaatctgacagtgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacac-gaaat 528  Q
    ||||||||||| |||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||  ||||    
T  11968233 ttacatgttgggaacacgctgtccaataattagctcaatcagacagtgaacgaagccgtagtcgcaattctacgatgacaggtttgaagaaaacaaaaat 11968332  T
Q  529 ggcttaaattagaatttcatgaagtgagacaagagataaattagaagaacataaatgaaaaggacttacacgaaaattatttgacaagatgatagcatag 628  Q
    | ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  11968333 gacttaaattagaatttgatgaagtgagacaagggataaattagaagaacatatatgaaaaggacttgcacgaaaatta-ttgacaagatgatagcatag 11968431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 5004687 - 5004973
Alignment:
Q  29 tattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccacat 128  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5004687 tattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacat 5004785  T
Q  129 aacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttc 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  5004786 aacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttc 5004885  T
Q  229 ttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttga 316  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5004886 ttttcaaaagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttga 5004973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 46404537 - 46404813
Alignment:
Q  28 atattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 127  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||         | |||||||||    
T  46404537 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaat---------gccattccaca 46404626  T
Q  128 taacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 227  Q
     |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404627 aaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 46404726  T
Q  228 cttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatgggg-aaaaagcccttacct 313  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  46404727 cttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacct 46404813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 117 - 423
Target Start/End: Complemental strand, 16975450 - 16975136
Alignment:
Q  117 gtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 216  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975450 gtcattccacataaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 16975351  T
Q  217 gttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtat-ggggaaaaagcccttaccttg 315  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || | | |||| |||| |||||||||||||| |    
T  16975350 gttgttttgttcttttcaacaaacaagaatctctacctctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacctcg 16975251  T
Q  316 agagcttttcttcctagccgaactctaaac-------cacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacga 408  Q
      ||||||||||||||||| ||| ||||||        ||||||||||||| ||||| || |||||||||| |||  |||||||||||||||||||||||    
T  16975250 taagcttttcttcctagccaaacactaaactacctcaaacctcaaactcacagctacggtacagacacattttctgtcactccaggaattattttgacga 16975151  T
Q  409 tcagaccgttgaaaa 423  Q
    |  ||||||||||||    
T  16975150 ttggaccgttgaaaa 16975136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16975542 - 16975453
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaaca 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  16975542 aaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaaca 16975453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 16475381 - 16475277
Alignment:
Q  210 tattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccctt 309  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  310 acctt 314  Q
    |||||    
T  16475281 acctt 16475277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 7337291 - 7337377
Alignment:
Q  271 tcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 357  Q
    |||||| |||||||||||||||||||||||||||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  7337291 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 7337377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 8730966 - 8730913
Alignment:
Q  146 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 198  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  8730966 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 8730913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 9082853 - 9082800
Alignment:
Q  146 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 198  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  9082853 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 9082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 9104261 - 9104172
Alignment:
Q  226 ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 315  Q
    |||||||||| |||||| |||  ||||| ||| || |||||| | |||||  ||||||||   ||||||||||||||| |||||||||||    
T  9104261 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttaccttg 9104172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 32450201 - 32450514
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32450201 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttctttaacaataccacaaaaacatatatgcata 32450300  T
Q  101 gaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  32450301 gaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaagttaaaatttaccat 32450400  T
Q  201 atgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||| |||| |    
T  32450401 atgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacacaatcctagtacttagtaagaacgtacgggg-a 32450499  T
Q  301 aaagcccttaccttg 315  Q
    |||||||||||||||    
T  32450500 aaagcccttaccttg 32450514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 23260517 - 23260828
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||    
T  23260517 aaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaa-tctaacacttctttaacaataccacaaaaacatatatgaata 23260615  T
Q  101 gaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23260616 gaaaaataaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggctaaattttaccat 23260715  T
Q  201 atgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaa 300  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  23260716 atgaattcatattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataacataatcctaatacttagtaagaacgtatggggaa 23260815  T
Q  301 aaagcccttacct 313  Q
    |||||||||||||    
T  23260816 aaagcccttacct 23260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 314
Target Start/End: Complemental strand, 25005432 - 25005143
Alignment:
Q  25 tctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattcc 124  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25005432 tctatattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattcc 25005333  T
Q  125 acataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgtttt 224  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25005332 acataaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgtttt 25005233  T
Q  225 gttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 314  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| | ||||||||    
T  25005232 gttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacctt 25005143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 312
Target Start/End: Complemental strand, 34636457 - 34636188
Alignment:
Q  28 atattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 127  Q
    ||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||| |||||||||        ||||||| |||||    
T  34636457 atattttcatttatttagtttatcagcaaagtctaacactta-------ataccacaaaaacatatatgaatagaaaaa--------atgtcatgccaca 34636373  T
Q  128 taacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636372 taacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 34636273  T
Q  228 cttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 312  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  34636272 cttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 10751527 - 10751637
Alignment:
Q  29 tattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccacat 128  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10751527 tattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacat 10751625  T
Q  129 aacattatcata 140  Q
    ||||||||||||    
T  10751626 aacattatcata 10751637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 261 - 410
Target Start/End: Original strand, 10751623 - 10751772
Alignment:
Q  261 cataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcacc 360  Q
    |||||||| ||| |||||||||||| | | |||||||||||| |||||||||| |  ||||||  ||||||||| ||| |||||| |||||||||||||     
T  10751623 cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacctcgtaagctttcattcctagccaaacactaaactacctcaaactcaca 10751722  T
Q  361 gctactgtgcagacacattgtctcgcactccaggaattattttgacgatc 410  Q
    |||||||| || |||| || |||  |||||||||||||||||||||||||    
T  10751723 gctactgttcaaacacgttttctgtcactccaggaattattttgacgatc 10751772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 209 - 357
Target Start/End: Original strand, 13777247 - 13777393
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    ||||||||||||||||  ||||| ||| ||| || ||| | ||| ||||||||| ||||| ||||||||| ||| |||||||||| |||||||||| |||    
T  13777247 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtcct 13777344  T
Q  309 taccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 357  Q
    ||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  13777345 tacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 13777393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  213 tttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 312  Q
    |||||||||||| ||||| |||||| |||| |||||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  26182602 tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 476 - 642
Target Start/End: Original strand, 10751779 - 10751946
Alignment:
Q  476 tgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacg-aaatggctta-aattagaatttcatgaagtgagacaagagataaattaga 573  Q
    ||||||||| |||||||||| ||||   | ||||||||||  ||| ||| |||||||||| ||||||||||||||  |||||||||||| ||||| | ||    
T  10751779 tgaacgaaggcgtagtcgcagttctccaaggacaggtttagtgaaaacggaaatggcttagaattagaatttcat--agtgagacaagaaataaaatgga 10751876  T
Q  574 agaacataaatg-aaaaggacttacacgaaaattatttgacaagatgatagcatagggattgatcgatgg 642  Q
    |||||||| ||| |||||||||| ||| |||||||||| ||||||||||||||||| ||||| |||||||    
T  10751877 agaacatatatgcaaaaggacttgcacaaaaattatttaacaagatgatagcatagagattggtcgatgg 10751946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 148 - 332
Target Start/End: Complemental strand, 24992578 - 24992398
Alignment:
Q  148 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatc 247  Q
    |||||||||  |||||||| |||| | |||||||||||  ||||||||||||  | ||   |||||||| |||||||  ||||||||| | |||| |||     
T  24992578 catataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatt 24992482  T
Q  248 tctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc-ttgagagcttttcttcctag 332  Q
    ||||| | ||||||||||||||  ||||||||||| ||| ||| ||| ||||||||||||||||| ||||  ||||||||||||||    
T  24992481 tctacttataattcataacatatccctagtacttaatatagacatat-gggaaaaagcccttaccattga-cgcttttcttcctag 24992398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 11166587 - 11166664
Alignment:
Q  238 gacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 315  Q
    |||||||||||||||| ||| ||||||| |  ||||||  |||||||| | |||||||||||||||||||||||||||    
T  11166587 gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttaccttg 11166664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 26182570 - 26182608
Alignment:
Q  9 tcataaaactcatatttctatattttcatttatttagtt 47  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26182570 tcatagaactcatatttctatattttcatttatttagtt 26182608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 35761988 - 35762302
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcata 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  35761988 aaatattttcataaaacacatatttctatattttcatttatttagtttatctacaaagtctaacacttcattaacaataccacaaaaacatatatgcata 35762087  T
Q  101 gaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataac--ttttataaaaggttaaattttacc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  35762088 gaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatatagttaaactaataacttttttataaaaggttaaattttacc 35762187  T
Q  199 atatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatgggg 298  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35762188 atataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtatggacgtatgggg 35762287  T
Q  299 aaaaagcccttacct 313  Q
    |||||||||||||||    
T  35762288 aaaaagcccttacct 35762302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 84 - 311
Target Start/End: Original strand, 9537377 - 9537602
Alignment:
Q  84 aaaaacatatatgcatagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaa 183  Q
    ||||||||||| |||||| || || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9537377 aaaaacatatacgcatagcaacatgaaataaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaa 9537476  T
Q  184 aggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttag 283  Q
    |||||||||||||| |||| |||| |||||||| ||||||  ||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||    
T  9537477 aggttaaattttacaatataaatttatattttacttgttt--ttcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcag 9537574  T
Q  284 tatggacgtatggggaaaaagcccttac 311  Q
    |||||||||||| || ||||||||||||    
T  9537575 tatggacgtatgaggtaaaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 272 - 527
Target Start/End: Complemental strand, 8421615 - 8421359
Alignment:
Q  272 cctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgca 371  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| |    
T  8421615 cctagcacttagtatgtacgtatggggaaaaagcccttaccttgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaa 8421516  T
Q  372 gacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaa-agaagatttacatgttggaaacacgttgaccaaaaattagctcaatct 470  Q
    ||||   | |||| || ||||||| ||| |||||||| | |||||||||||  |||||    |||||||| |||||| || |||||||| |||||||||     
T  8421515 gacatggtttctctcagtccaggagttagtttgacgaccggaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaatgagctcaatcg 8421416  T
Q  471 gacagtgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa 527  Q
    ||| |||||||||| |||| ||||||||||| ||||||| |||| | ||| ||||||    
T  8421415 gacggtgaacgaaggcgtaatcgcaattctacgatgacatgtttgaggaaaacgaaa 8421359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 37667265 - 37667393
Alignment:
Q  178 tataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagt 277  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt 37667364  T
Q  278 acttagtatggacgtatggggaaaaagcc 306  Q
    |||||||| | ||||||||||||||||||    
T  37667365 acttagtaagaacgtatggggaaaaagcc 37667393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 16075014 - 16074708
Alignment:
Q  2 aatattttcataaaactcatatttctatatttt-catttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaa-catatatgcat 99  Q
    ||||||||||| ||||||| ||||  ||||||| ||||| |||||||||| || ||| |||||||||| |||  |||||  | ||||| | ||||   ||    
T  16075014 aatattttcatgaaactcacattttcatatttttcatttctttagtttataaaaaaaatctaacacttctttcccaatataaaaaaaaacctataaagat 16074915  T
Q  100 agaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaa-ctaataacttttataaaaggttaaattttacc 198  Q
    ||  |||||||||||||||||||| |||| |||||||||||           ||||||||||||||| ||||||||||||||||||| |||||||||| |    
T  16074914 agccaaataaaataaatgtcattctacattacattatcata-----------taaaatataattaaatctaataacttttataaaagattaaattttaac 16074826  T
Q  199 atatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataa---cataatcctagtacttagtatggacgtatg 295  Q
    |||||||||||||||||| ||||||  ||||||| ||| |||||||||||||| |||||||||||||   ||| |||| ||||||||||||| |||||||    
T  16074825 atatgaattcatattttaattgttt--ttctttttaacggacaaaaatctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatg 16074728  T
Q  296 gggaaaaagcccttaccttg 315  Q
    || |||||||||||||||||    
T  16074727 ggaaaaaagcccttaccttg 16074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 37667144 - 37667271
Alignment:
Q  28 atattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 127  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  37667144 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataaaagtcattccaca 37667242  T
Q  128 taacattatcatacacacatcatataaaa 156  Q
    ||||||||||||||| |||||||||||||    
T  37667243 taacattatcatacagacatcatataaaa 37667271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 191 - 357
Target Start/End: Original strand, 21264718 - 21264884
Alignment:
Q  191 attttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggac 290  Q
    |||||||||| | |||  |||||||| ||||||| |||||||||| |||||| |||  ||||| ||  || || ||| |  ||||| |||||||| | ||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaac 21264817  T
Q  291 gtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 357  Q
    ||||||||||||||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  21264818 gtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 21264884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 43407964 - 43408025
Alignment:
Q  271 tcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctag 332  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43407964 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctag 43408025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 338123 - 338060
Alignment:
Q  249 ctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 313  Q
    ||||||||| || |||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  338123 ctacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 338060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 6836056 - 6835953
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    |||||||| ||||||| |||||||||| |||||| |||  ||||| ||| || || | | |  ||||| |||||||| | ||||||||||||||||||||    
T  6836056 atattttaattgttttcttcttttcaaaagacaagaattgctacccctatttaatcataaagccctagcacttagtaagaacgtatggggaaaaagccct 6835957  T
Q  309 tacc 312  Q
    ||||    
T  6835956 tacc 6835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 2269840 - 2269878
Alignment:
Q  304 gcccttaccttgagagcttttcttcctagccgaactcta 342  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2269840 gcccttaccttgagagctcttcttcctagccgaactcta 2269878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 16110667 - 16110591
Alignment:
Q  238 gacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 314  Q
    ||||| ||| |||||  ||| |||| ||||||||| ||| |||||||||||| ||||| ||||||| | ||||||||    
T  16110667 gacaagaatttctacaactatttcaaaacataatcttagcacttagtatggatgtatgaggaaaaaactcttacctt 16110591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 28 - 402
Target Start/End: Complemental strand, 9125 - 8749
Alignment:
Q  28 atattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaa-taaaataaatgtcattccac 126  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  9125 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaaataaaataaatgtcattccac 9027  T
Q  127 ataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt 226  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9026 ataacattatcatacagacatcatataaaatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgt 8927  T
Q  227 tcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttct 326  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  8926 tcttttcaacagacaagaatttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttct 8827  T
Q  327 tcctagccgaactctaaaccacctcaaactcac--cgctactgtgcagacacattgtctcgcactccaggaattattt 402  Q
    |||||||| |||||||||||| |||||| ||||  ||||||||||||||||| || || |  ||||||||||||||||    
T  8826 tcctagccaaactctaaaccaactcaaagtcacagcgctactgtgcagacacgttttcactaactccaggaattattt 8749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 524 - 642
Target Start/End: Complemental strand, 8680 - 8562
Alignment:
Q  524 gaaatggctta-aattagaatttcatgaagtgagacaagagataaattagaagaacataaatg-aaaaggacttacacgaaaattatttgacaagatgat 621  Q
    ||||||||||| ||||||||||||||  |||||||||||| ||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  8680 gaaatggcttagaattagaatttcat--agtgagacaagaaataaaatggaagaacatatatgcaaaaggacttacacgaaaattatttgacaagatgat 8583  T
Q  622 agcatagggattgatcgatgg 642  Q
    ||||||| ||||| |||||||    
T  8582 agcatagagattggtcgatgg 8562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 15873911 - 15874186
Alignment:
Q  28 atattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 127  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||        ||| |||||||||    
T  15873911 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgccattccaca 15874001  T
Q  128 taacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 227  Q
     |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874002 aaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 15874101  T
Q  228 cttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 312  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  15874102 cttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 21491432 - 21491739
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaa---catatatgc 97  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |||  ||||||||||||||   |||||||||    
T  21491432 aaatattttcataaaactcatattactatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaaacatatatgc 21491531  T
Q  98 atagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttac 197  Q
    |||  ||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21491532 atatcaaaataaaataaatgtcattctacataacatttt-atgcacacatcatataaaatataattaaactaataacttttataaaaggttaaattttac 21491630  T
Q  198 catatgaattcatattttagttgttttg--ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatg 295  Q
    ||||| |||||||||||||||| |||||  ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21491631 catataaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacatcatcctagtacttagtatggacgtatg 21491730  T
Q  296 gggaaaaag 304  Q
    || ||||||    
T  21491731 ggaaaaaag 21491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 84 - 313
Target Start/End: Complemental strand, 22077860 - 22077633
Alignment:
Q  84 aaaaacatatatgcatagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaa 183  Q
    |||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  22077860 aaaaacatatatgcataggaaaataaagcaaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaa 22077761  T
Q  184 aggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttag 283  Q
     |||||||||||||||||| |||| |||||||||||||||  ||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  22077760 tggttaaattttaccatataaatttatattttagttgttt--ttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttag 22077663  T
Q  284 tatggacgtatggggaaaaagcccttacct 313  Q
    |||| || |||||| |||||||||||||||    
T  22077662 tatgaacatatgggaaaaaagcccttacct 22077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 18367266 - 18367576
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaa--catatatgca 98  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||  ||||||||||||||  ||||||||||    
T  18367266 aaatatttttataaatctcatatttctatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaacatatatgca 18367365  T
Q  99 tagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttacc 198  Q
    ||  ||||||||||||||||||||| || ||||||| | ||| |      || |||||||||||||||||||||||||||||||||||||||||||||||    
T  18367366 tatcaaaataaaataaatgtcattctacgtaacattttaatata------at-taaaatataattaaactaataacttttataaaaggttaaattttacc 18367458  T
Q  199 atatgaattcatattttagtt--gtttt-gttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatg 295  Q
    |||| ||||||||||||| ||  |||||  |||||||||||| |||| ||||||||||| |||||||||||||  ||||||| |||| |||||||||||     
T  18367459 atataaattcatattttaatttggttttctttcttttcaacaaacaagaatctctacctttaattcataacatcgtcctagttcttattatggacgtata 18367558  T
Q  296 gggaaaaagcccttacct 313  Q
    ||||||||||||||||||    
T  18367559 gggaaaaagcccttacct 18367576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 278 - 527
Target Start/End: Original strand, 49170491 - 49170741
Alignment:
Q  278 acttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacaca 377  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| ||||||     
T  49170491 acttagtatggacgtatggggaaaaaacccttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacg 49170590  T
Q  378 ttgtctcgcactccaggaattattttgacgatcagaccgttgaaa-agaagatttacatgttggaaacacgttgaccaaaaattagctcaatctgacagt 476  Q
    || |||| ||||||||||  || |||||||||| |||||||||||  |||||    |||||||| |||||| |  |||||||||||||||||| ||| ||    
T  49170591 ttttctctcactccaggagatagtttgacgatcggaccgttgaaattgaagaaccgcatgttgggaacacgctttccaaaaattagctcaatcggacggt 49170690  T
Q  477 gaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa 527  Q
    ||||||||||||||||||||||||| ||||||| |||| | ||| ||||||    
T  49170691 gaacgaagccgtagtcgcaattctacgatgacatgtttgaggaaaacgaaa 49170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 103 - 314
Target Start/End: Complemental strand, 48576540 - 48576331
Alignment:
Q  103 aaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaa-ctaataacttttataaaaggttaaattttaccata 201  Q
    |||||| ||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |  |||||||||||||||    
T  48576540 aaaatagaataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccata 48576441  T
Q  202 tgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaa 301  Q
    | ||||||||||||| || ||||   ||||| ||| || || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  48576440 taaattcatattttaattatttt---ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaa 48576344  T
Q  302 aagcccttacctt 314  Q
    |||||||||||||    
T  48576343 aagcccttacctt 48576331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 226 - 527
Target Start/End: Original strand, 12196729 - 12197026
Alignment:
Q  226 ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttc 325  Q
    ||||||| || |||||| |||  ||||| ||| || |||||||| |||| | |||||||| | | |||||||||||||||||||||||||  || |||||    
T  12196729 ttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttaccttgtaagtttttc 12196828  T
Q  326 ttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaaga 425  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||| |||||||||||||||||||||||||| ||    |||| ||    
T  12196829 ttcctagccgaactctaaaccacctcaaactcacagctacggtgcagacacgttttctctcactccaggaattattttgacgatcaaac----gaaacga 12196924  T
Q  426 agatttacatgttggaaacacgttgaccaaaaattagctcaatctgacagtgaacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacga 525  Q
    | |   ||||| ||  |||| |||  ||||| |||||||| ||| ||| |||||||||| |||||| ||||||||| |||||||||||| | ||| ||||    
T  12196925 aaaaccacatgctgagaacatgttttccaaatattagctccatcggaccgtgaacgaaggcgtagttgcaattctacgatgacaggttttaggaaaacga 12197024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 172 - 357
Target Start/End: Original strand, 48654339 - 48654522
Alignment:
Q  172 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataat 271  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||| ||| | ||| ||||||||| ||||| ||    
T  48654339 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 48654436  T
Q  272 cctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 357  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||    
T  48654437 cctagtacttagtatggacgtatggggaaaaaacccttacctcgaaagcttttgttcctagccgaactctaaaccacctcaaactc 48654522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 10289388 - 10289474
Alignment:
Q  271 tcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 357  Q
    |||||| |||||||||||||||||||||||||||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 10289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 9993427 - 9993290
Alignment:
Q  177 ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctag 276  Q
    ||||||||  ||| |||||||||||| |||  |||||||| ||||||| |||||||||| |||||| |||   |||| ||| || |||||| |  |||||    
T  9993427 ttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagccctag 9993328  T
Q  277 tacttagtatggacgtatggggaaaaagcccttacctt 314  Q
     |||||||| | |||| |||||||||||||||||||||    
T  9993327 cacttagtaagaacgtgtggggaaaaagcccttacctt 9993290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 12911867 - 12911970
Alignment:
Q  226 ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttc 325  Q
    ||||||| || ||||||||||  |||||| || || |||||| || ||||| ||||||||||||||||| |||||||| |||||||||  ||||||||||    
T  12911867 ttctttttaaaagacaaaaattgctacctttacttaataacacaa-cctagcacttagtatggacgtat-gggaaaaaacccttacctcaagagcttttc 12911964  T
Q  326 ttccta 331  Q
    ||||||    
T  12911965 ttccta 12911970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 7503946 - 7503908
Alignment:
Q  276 gtacttagtatggacgtatggggaaaaagcccttacctt 314  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacctt 7503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 4557908 - 4558222
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaa--acatatatgca 98  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||| |||  |||||||||||||  |||||||||||    
T  4557908 aaatattttcataaaactcatatttatatattttcatttctttagtttatcaacaaaatccaacacttctttctcaataccacaaaaaaacatatatgca 4558007  T
Q  99 tagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttacc 198  Q
    ||  ||||||||||||| ||||||| || ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4558008 tatcaaaataaaataaaagtcattctacgtaacattattatacacacattatataaaatatgattaaactaataacttttataaaaggttaaattttacc 4558107  T
Q  199 atatgaattcatattttagttgttttgt-tcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggg 297  Q
    |||| |||||||||||||||| |||| | |||| ||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||| ||||||| ||    
T  4558108 atataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttagtatagacgtat-gg 4558206  T
Q  298 gaaaaagcccttacct 313  Q
    ||||||||||||||||    
T  4558207 gaaaaagcccttacct 4558222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 152 - 312
Target Start/End: Complemental strand, 536891 - 536731
Alignment:
Q  152 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctcta 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  536891 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 536792  T
Q  252 cctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacc 312  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  536791 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 537090 - 536895
Alignment:
Q  28 atattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 127  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||        ||| |||||||||    
T  537090 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgccattccaca 537000  T
Q  128 taacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536999 taacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 536900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 27026708 - 27026620
Alignment:
Q  226 ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctt 314  Q
    |||||||||| |||||| |||   |||| ||| || |||||| |||||||| ||||||||   ||||||||||||||||||||||||||    
T  27026708 ttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacctt 27026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 38000885 - 38000833
Alignment:
Q  273 ctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttc 325  Q
    |||| |||||||||||||||||||||||||| |||||||||||  ||||||||    
T  38000885 ctagcacttagtatggacgtatggggaaaaaacccttaccttgccagcttttc 38000833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 4e-95; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 49499324 - 49499045
Alignment:
Q  1 aaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttatttaacaataccacaaaaa-catatatgcat 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||  |||||||||||||| |||||||||||    
T  49499324 aaatattttcataaaactcatatttctatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaacatatatgcat 49499225  T
Q  100 agaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttacca 199  Q
    |  ||||||||||||||||||||| || ||||||  | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  49499224 atcaaaataaaataaatgtcattctacgtaacatctt-atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttacta 49499126  T
Q  200 tatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtact 280  Q
    ||| |||||||||||||||| |||| ||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  49499125 tataaattcatattttagttttttttttcttctcaacagacaagaatctccacctctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 84 - 314
Target Start/End: Original strand, 28969204 - 28969432
Alignment:
Q  84 aaaaacatatatgcatagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaa 183  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28969204 aaaaacatatatgcatagcaaaataaaataaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaa 28969303  T
Q  184 aggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttag 283  Q
    | ||||||||||||||||| |||| |||||||||||||||  ||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  28969304 atgttaaattttaccatataaattaatattttagttgttt--ttcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttag 28969401  T
Q  284 tatggacgtatggggaaaaagcccttacctt 314  Q
    |||||||||||| ||||||| ||||||||||    
T  28969402 tatggacgtatgaggaaaaaacccttacctt 28969432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 40458992 - 40458887
Alignment:
Q  226 ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttc 325  Q
    ||||||| || |||||| |||  ||||||||| || |||||| | || ||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  40458992 ttctttttaaaagacaagaattgctacctctacttaataacacagtc-tagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttc 40458894  T
Q  326 ttcctag 332  Q
    |||||||    
T  40458893 ttcctag 40458887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 41868655 - 41868568
Alignment:
Q  227 tcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 315  Q
    ||||||||| |||||| ||| ||||| ||||||||| ||||| |||||| |||||||||||||||||| |||||||||| |||||||||    
T  41868655 tcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtat-gggaaaaagcacttaccttg 41868568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 69352 - 69251
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    |||||||| |||||||  ||||||||| |||||| |||  ||||| ||| || |||||| | |||||  ||||||||||||||||| |||||||| ||||    
T  69352 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtat-gggaaaaaaccct 69256  T
Q  309 tacct 313  Q
    |||||    
T  69255 tacct 69251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 42900719 - 42900805
Alignment:
Q  337 actctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaa 423  Q
    ||||||| || |||||||||||| || ||  ||||||| |||| |||| |||||||| |||||||| || |||| ||| ||||||||    
T  42900719 actctaagccgcctcaaactcacagccacaatgcagactcattttctctcactccagaaattatttggatgatcggacagttgaaaa 42900805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 162 - 357
Target Start/End: Original strand, 32735391 - 32735586
Alignment:
Q  162 ttaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattc 261  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32735391 ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 32735490  T
Q  262 ataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactc 357  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32735491 ataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttcttcctagccgaactctaaaccacctcaaactc 32735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 303 - 642
Target Start/End: Complemental strand, 22403757 - 22403415
Alignment:
Q  303 agcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattt 402  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||  | |||| | ||||||  |||| ||    
T  22403757 agcccttacctcgagatcttttcttcctagccgaactctaaaccaccttaaactcacagctacggtgcagacacgatttctctcgctccagtcattaatt 22403658  T
Q  403 tgacgatcagaccgttgaaaa-gaagatttacatgttggaaacacgttgaccaaaaattagctcaatctgacagtgaacgaagccgtagtcgcaattcta 501  Q
    |||||||||| |||||||||| |||||  | ||||||| ||||| | || |||||||||||||||||   || |||||||||| ||||| | |||||||     
T  22403657 tgacgatcaggccgttgaaaatgaagaactgcatgttgcaaacatgctgcccaaaaattagctcaattgaacggtgaacgaaggcgtagacacaattctc 22403558  T
Q  502 t--gatgacaggtttaaagaacacgaaa-tggcttaa-attagaatttcatgaagtgagacaagagataaattagaagaacataaatg-aaaaggactta 596  Q
    |  || ||||||||||  ||| |||||| ||| |||| |||||||||||||  || |||| |||| ||||| | |||||||||| ||  |||||||||||    
T  22403557 tacga-gacaggtttagtgaaaacgaaaatggtttaagattagaatttcat--agcgagataagaaataaaatggaagaacatatatacaaaaggactta 22403461  T
Q  597 cacgaaaattatttgacaagatgatagcatagggattgatcgatgg 642  Q
    ||||||||||||||||||||||||  || |||| ||||||||||||    
T  22403460 cacgaaaattatttgacaagatgagggcttaggaattgatcgatgg 22403415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 278 - 402
Target Start/End: Original strand, 41340858 - 41340981
Alignment:
Q  278 acttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaaccacctcaaactcaccgctactgtgcagacaca 377  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||  |||| ||  ||||||     
T  41340858 acttagtatggacgtatggg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacaactacggttaagacacg 41340956  T
Q  378 ttgtctcgcactccaggaattattt 402  Q
    || |||| ||||||| |||||||||    
T  41340957 ttttctctcactccaagaattattt 41340981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 12774954 - 12775057
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    ||||||||||||||||  ||||| ||| ||| || ||| | ||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  12774954 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagccct 12775051  T
Q  309 tacctt 314  Q
    ||||||    
T  12775052 tacctt 12775057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 36732564 - 36732642
Alignment:
Q  345 ccacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatcagaccgttgaaaa 423  Q
    ||||||||||||||   |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  36732564 ccacctcaaactcataactactgtgcagacacattttctctcactccaggaattattttgacgatcggaccgttgaaaa 36732642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 28267692 - 28267794
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    ||||||||||||||||  ||||||||| ||| || ||| | ||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||    
T  28267692 atattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtat-gggaaaaaaccct 28267788  T
Q  309 tacctt 314  Q
    ||||||    
T  28267789 tacctt 28267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 18292882 - 18292986
Alignment:
Q  226 ttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttc 325  Q
    ||||||| || |||||| |||  ||||||||| || |||||| |  ||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  18292882 ttctttttaaaagacaagaattgctacctctacttaataacacag-cctagcacttagtatggacgtatgggaaaaaaacccttaccttgagag-ttttc 18292979  T
Q  326 ttcctag 332  Q
    |||||||    
T  18292980 ttcctag 18292986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 120 - 294
Target Start/End: Complemental strand, 29270827 - 29270654
Alignment:
Q  120 attccacataacattatcatacacacat--catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttag 217  Q
    ||||||||| ||||| ||||||||| ||  || ||||| |||||||||| |||||| ||||||||||  ||||||||||| || | | | |||||||||     
T  29270827 attccacatcacattctcatacacaaatatcaaataaa-tataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaa 29270729  T
Q  218 ttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtat 294  Q
    ||||||  |||||||||| |||||| |||  ||||| ||| || ||| || || ||||  |||||||||||||||||    
T  29270728 ttgttt--ttcttttcaaaagacaagaattgctaccactatttaatagcacaaccctaacacttagtatggacgtat 29270654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 40447496 - 40447433
Alignment:
Q  249 ctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 313  Q
    ||||||||| || |||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  40447496 ctacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 40447433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 574
Target Start/End: Original strand, 41341000 - 41341098
Alignment:
Q  478 aacgaagccgtagtcgcaattctatgatgacaggtttaaagaacacgaaa-tggcttaaattagaattt-catgaagtgagacaagagataaattagaa 574  Q
    ||||||| |||||||||| ||||| | |||| ||||| | ||| |||||| || ||||||| ||||||| |||||||||| ||||||||||||||||||    
T  41341000 aacgaaggcgtagtcgcagttctacgctgactggtttgaggaaaacgaaaatgacttaaatcagaattttcatgaagtgaaacaagagataaattagaa 41341098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 313
Target Start/End: Complemental strand, 1193831 - 1193599
Alignment:
Q  81 cacaaaaacatatatgcatagaaaaataaaata--aatgtcattccacataacattatcatacacac--atcatataaaatataattaaactaataactt 176  Q
    ||||||||||||||  ||||  |||||||||||  ||| ||||||| ||| ||||   ||||||||   |||||||||||   ||||||| |||| |||     
T  1193831 cacaaaaacatataaacataataaaataaaataccaatatcattccgcatcacat---catacacaactatcatataaaactcaattaaaataatcactc 1193735  T
Q  177 ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctag 276  Q
    ||||||||  ||| | |||||||| | |||  |||||||| ||||||| |||||||||| |||||| |||  ||||| ||  || |||||| | | ||||    
T  1193734 ttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaataacaaagtactag 1193635  T
Q  277 tacttagtatggacgtatggggaaaaagcccttacct 313  Q
     |||||||| | || ||| ||||||||||||||||||    
T  1193634 cacttagtaagaacttat-gggaaaaagcccttacct 1193599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 397 - 221
Alignment:
Q  90 atatatgcatagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggtta 189  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  397 atatatgcatggcaaaataaaataaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggtta 298  T
Q  190 aattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacat 268  Q
    |||||||||||||  ||| |||||||| || |||  ||||||| |||| |||| |||||||| ||||||||||||||||    
T  297 aattttaccatatagatttatattttaattattt--ttctttttaacaaacaagaatctctatctctaattcataacat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 146 - 410
Target Start/End: Complemental strand, 35839268 - 35839004
Alignment:
Q  146 atcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaaaa 245  Q
    |||||||||||   ||||||| |||| ||| ||||||||  ||| |||||||||| | |||  |||||||| ||||||| |||||||||| |||||| ||    
T  35839268 atcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 35839169  T
Q  246 tctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttgagagcttttcttcctagccgaactctaaac 345  Q
    |   ||||  |  || |||||| |  ||||  ||||||||   |  |||||||||||||| |||| || |||||||||||||||||| | ||||||||||    
T  35839168 ttgttacccgtgtttaataacaaagccctatcacttagtaataatttatggggaaaaagctcttagctcgagagcttttcttcctagtcaaactctaaac 35839069  T
Q  346 cacctcaaactcaccgctactgtgcagacacattgtctcgcactccaggaattattttgacgatc 410  Q
    ||||||||| ||||  |||  |||||||||| || |||| ||||| ||| |||||||||||||||    
T  35839068 cacctcaaagtcacaactatggtgcagacacgttttctctcactctagggattattttgacgatc 35839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 22816487 - 22816609
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    |||||||| |||||||  ||||||||| |||||| |||  | ||| ||| || |||||| | |||||  |||||| | | ||||||||||||||||||||    
T  22816487 atattttaattgtttt--tcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagccct 22816584  T
Q  309 taccttgagagcttttcttcctagc 333  Q
    ||||| ||||||||| |||||||||    
T  22816585 tacctcgagagctttccttcctagc 22816609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 2645 - 2722
Alignment:
Q  238 gacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttaccttg 315  Q
    ||||| ||| |||||| ||| || |||||| | |||||| |||||||| | |||||||||||||||||||||||||||    
T  2645 gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttaccttg 2722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 243170 - 243292
Alignment:
Q  209 atattttagttgttttgttcttttcaacagacaaaaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagccct 308  Q
    |||||||| ||||||| |||||||||| |||||| |||   |||| ||| || |||||| |  ||||  |||||||| | | |||||||||||| ||| |    
T  243170 atattttaattgttttcttcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatggggaaaacgccat 243269  T
Q  309 taccttgagagcttttcttccta 331  Q
    ||||| || |||||| |||||||    
T  243270 tacctcgaaagctttccttccta 243292  T

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