View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17791_low_5 (Length: 500)
Name: NF17791_low_5
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17791_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 45 - 321
Target Start/End: Complemental strand, 34771044 - 34770768
Alignment:
| Q |
45 |
ctaccaagtaatgatggggaagccaatgatcaacttcttaaatacataagttgttgcagtcgcatgtaacgaaggggccacaaccgtaacaattatgtaa |
144 |
Q |
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| T |
34771044 |
ctaccaagtaatgatggggaagccaatgatcaacttcttaaatacataagttgttgcagtcgcctgtaacgaagggtccacaaccgtaacaattatgtaa |
34770945 |
T |
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| Q |
145 |
attcatattttatgggttttcttttggcacttgatcaatcattgtgtagttggtacttactaggtgtctactaatgtatttgcacacaagttgtaataca |
244 |
Q |
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| T |
34770944 |
attcatattttatgggctttcttttggcacttgatcaatcattgtgtagttgttacttactaggtgtctacttatgtatttgcacacaaattgtaataca |
34770845 |
T |
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| Q |
245 |
ttggctatattgttgtaataccttgccttggtttggcaccatttcaccaccaaagaacacttacaatcttgcatagt |
321 |
Q |
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| T |
34770844 |
ttggctatattgttgtaataccttgccttggtttggcaccatttcaccaccaaagaacacttagaatcttgcatagt |
34770768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 34770704 - 34770604
Alignment:
| Q |
386 |
actatgaatagtgggtagttttcttaggtcttggaatcatgaaaactaatcttatgaaaaacttttcatgatccttatttctttcttttgattataaaat |
485 |
Q |
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| T |
34770704 |
actatgaatagtgggtagttttcttaggtcttggaatcatgaaaactaatcttatgaaaaacttttcatgatccttatttctttcttttgattataaaat |
34770605 |
T |
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| Q |
486 |
g |
486 |
Q |
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| T |
34770604 |
g |
34770604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 8780692 - 8780738
Alignment:
| Q |
53 |
taatgatggggaagccaatgatcaacttcttaaatacataagttgtt |
99 |
Q |
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| T |
8780692 |
taatgatgaggaaaccaatgatcaacttcttaattatataagttgtt |
8780738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 24480476 - 24480556
Alignment:
| Q |
395 |
agtgggtagttttcttaggtcttggaatcatgaaaactaatcttatgaaaaacttttcatgatcctt-atttctttctttt |
474 |
Q |
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|||| |||||||| ||| || |||| || ||||||| |||| |||||| ||||||||||| |||||| |||||||||||| |
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| T |
24480476 |
agtgagtagtttttttaagttttgggattatgaaaagtaattttatgataaacttttcataatccttgttttctttctttt |
24480556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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