View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17791_low_7 (Length: 471)

Name: NF17791_low_7
Description: NF17791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17791_low_7
NF17791_low_7
[»] chr1 (13 HSPs)
chr1 (18-456)||(6521636-6522075)
chr1 (18-449)||(6512568-6513000)
chr1 (283-453)||(6516963-6517133)
chr1 (18-214)||(6506903-6507099)
chr1 (301-453)||(6506657-6506809)
chr1 (18-197)||(6517220-6517399)
chr1 (105-222)||(47778041-47778158)
chr1 (125-222)||(47788183-47788280)
chr1 (18-190)||(47760133-47760299)
chr1 (125-218)||(47781969-47782062)
chr1 (368-408)||(47759914-47759954)
chr1 (113-190)||(6523733-6523810)
chr1 (368-408)||(47712999-47713039)
[»] scaffold0341 (4 HSPs)
scaffold0341 (18-214)||(928-1124)
scaffold0341 (18-214)||(8581-8778)
scaffold0341 (301-453)||(682-834)
scaffold0341 (301-453)||(8335-8487)
[»] chr7 (1 HSPs)
chr7 (21-166)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (19-139)||(28856512-28856632)
chr5 (87-137)||(28831318-28831368)
chr5 (19-139)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 6521636 - 6522075
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521636 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 6521735  T
Q  118 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6521736 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 6521835  T
Q  218 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaa-nnnnnnnnggatagtttaagaaataaagctgcatcaggggac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||    
T  6521836 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggac 6521935  T
Q  317 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521936 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat 6522035  T
Q  417 tatgtgatgattgtttggttcaatctatcaaagaaatttc 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6522036 tatgtgatgattgtttggttcaatctatcaaagaaatttc 6522075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 6513000 - 6512568
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| |||||    
T  6513000 gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc 6512901  T
Q  118 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 217  Q
    |||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| ||||| || |||| | |||||  |||    
T  6512900 aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagaccttttta 6512801  T
Q  218 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnn-ggatagtttaagaaataaagctgcatcaggggac 316  Q
    ||| |  |||| |   ||||| || |||||||| | ||| ||| | |||||  ||||         ||||| ||||||||||| |||| ||||||| ||     
T  6512800 tttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgat 6512701  T
Q  317 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat 416  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||    
T  6512700 agtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcat 6512601  T
Q  417 tatgtgatgattgtttggttcaatctatcaaag 449  Q
    | || ||||||||||||||  ||||||||||||    
T  6512600 tgtgcgatgattgtttggtaaaatctatcaaag 6512568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 283 - 453
Target Start/End: Complemental strand, 6517133 - 6516963
Alignment:
Q  283 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggt 382  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggt 6517034  T
Q  383 cttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaat 453  Q
    || | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  6517033 ctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaat 6516963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 6507099 - 6506903
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  6507099 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 6507000  T
Q  118 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 214  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  6506999 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 453
Target Start/End: Complemental strand, 6506809 - 6506657
Alignment:
Q  301 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 400  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 6506710  T
Q  401 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaat 453  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||    
T  6506709 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaat 6506657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 6517399 - 6517220
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||    
T  6517399 gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc 6517300  T
Q  118 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 197  Q
    ||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517299 aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
Q  105 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 204  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| ||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa 47778140  T
Q  205 ttggacctgcttattttg 222  Q
    |||||||||| |||||||    
T  47778141 ttggacctgcatattttg 47778158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  125 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 222  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | | ||| |  | ||| |||||  ||||||  |||||||| ||| ||| |||||    
T  47760299 gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc 47760200  T
Q  118 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 190  Q
     ||||| ||||||||||||||| ||||      ||||  | ||||||||||| ||||||||||| ||||||||    
T  47760199 caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt 47760133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  125 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 218  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 47759954 - 47759914
Alignment:
Q  368 caaaccatatatggtcttgttcaatgcacacctgatttgtc 408  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  47759954 caaaccatatatggtcttgttcagtgcacacctgatttgtc 47759914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  113 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 190  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 47713039 - 47712999
Alignment:
Q  368 caaaccatatatggtcttgttcaatgcacacctgatttgtc 408  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  47713039 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 47712999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 1124 - 928
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  1124 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 1025  T
Q  118 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 214  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  1024 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 8778 - 8581
Alignment:
Q  18 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 117  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  8778 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 8679  T
Q  118 aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 214  Q
    ||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  8678 aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 453
Target Start/End: Complemental strand, 834 - 682
Alignment:
Q  301 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 400  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 735  T
Q  401 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaat 453  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||    
T  734 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaat 682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 453
Target Start/End: Complemental strand, 8487 - 8335
Alignment:
Q  301 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 400  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 8388  T
Q  401 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaat 453  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||    
T  8387 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaat 8335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 722161 - 722305
Alignment:
Q  21 aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa 120  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  121 accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 166  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722260 accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
Q  19 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 118  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| ||||||     
T  28856632 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc 28856533  T
Q  119 aaaccgaaaagaagcaattgg 139  Q
    ||||  |||||||||||||||    
T  28856532 aaacaaaaaagaagcaattgg 28856512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  87 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 137  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 28861909 - 28861789
Alignment:
Q  19 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 118  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| | ||||     
T  28861909 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc 28861810  T
Q  119 aaaccgaaaagaagcaattgg 139  Q
     |||| |||||||||||||||    
T  28861809 taaccaaaaagaagcaattgg 28861789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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