View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17792_high_1 (Length: 422)
Name: NF17792_high_1
Description: NF17792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17792_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Complemental strand, 31010095 - 31009694
Alignment:
| Q |
21 |
aaggaaaggtgaaaaagagattgacacaaagacctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttc |
120 |
Q |
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| T |
31010095 |
aaggaaaggtgaaaaagagattgacacaaagacctaattgtaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttc |
31009996 |
T |
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| Q |
121 |
accaaaagcaaagtaacctaaagtagcaaaacctccatacaacagaaaaattagaaacattcccaaacccaaaactccaccaaatttatctttatctttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009995 |
accaaaagcaaagtaacctaaagtagcaaaacctccatacaatagaaaaattaggaacattcccaaacccaaaactccaccaaatttatctttatctttt |
31009896 |
T |
|
| Q |
221 |
gcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacggcaacacctaatccatatnnnnnnncagataaacctccaaaagtcttca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||| ||||||||||||| |
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| T |
31009895 |
gcttctgattccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatagaaaaacagataaaccaccaaaagtcttca |
31009796 |
T |
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| Q |
321 |
aagttggcctatttaccaaaaagacaaaaacaacctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatattctcaaaggaggcaa |
420 |
Q |
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||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
31009795 |
aaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaa |
31009696 |
T |
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| Q |
421 |
at |
422 |
Q |
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|| |
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| T |
31009695 |
at |
31009694 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 9782794 - 9782844
Alignment:
| Q |
229 |
ttccaaaggcaaaaccattcctattccttcaaaagaataaacggcaacacc |
279 |
Q |
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||||||||||||||||||||| || |||||||||| |||||| || ||||| |
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| T |
9782794 |
ttccaaaggcaaaaccattccaatcccttcaaaagcataaacagctacacc |
9782844 |
T |
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