View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17792_low_2 (Length: 372)

Name: NF17792_low_2
Description: NF17792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17792_low_2
NF17792_low_2
[»] chr5 (6 HSPs)
chr5 (16-361)||(40181220-40181566)
chr5 (102-361)||(38605704-38605960)
chr5 (231-319)||(40180547-40180635)
chr5 (174-310)||(41885856-41885992)
chr5 (251-372)||(38604999-38605120)
chr5 (332-372)||(41885995-41886035)
[»] chr8 (5 HSPs)
chr8 (199-326)||(44459540-44459667)
chr8 (107-372)||(44460150-44460412)
chr8 (199-326)||(44467073-44467200)
chr8 (107-372)||(44467683-44467945)
chr8 (251-326)||(34502307-34502382)
[»] chr1 (1 HSPs)
chr1 (107-372)||(46359020-46359282)
[»] chr6 (1 HSPs)
chr6 (242-297)||(410919-410974)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 40181566 - 40181220
Alignment:
Q  16 gaagtataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatgttaaactaaggaag 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  40181566 gaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcactatgatttcaatgttaaactaaggaag 40181467  T
Q  116 aaatacatatttttt-ctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatagaatccttc 214  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  40181466 aaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaactcatagaatccttc 40181367  T
Q  215 tctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgc 314  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40181366 tcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgc 40181267  T
Q  315 aagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaa 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40181266 aagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaa 40181220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 102 - 361
Target Start/End: Complemental strand, 38605960 - 38605704
Alignment:
Q  102 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaact 201  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||  ||| |||| | | |||||||| ||   ||||| ||| | ||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacct 38605861  T
Q  202 catagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttat 301  Q
    |||| ||| ||||||  |||| || |   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || |||    
T  38605860 catacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 38605761  T
Q  302 tactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaa 361  Q
    |||| |||||| |||||||||||   || ||||| ||||||||||||||| |||||||||    
T  38605760 tactttacacttcaagctctttt---gaccacaacgtgtagtgctgatatcatccaccaa 38605704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  231 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 319  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  174 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 273  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  274 tcaatgtgtgccaaatcaagatacttattactataca 310  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 38605120 - 38604999
Alignment:
Q  251 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 350  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  351 tgatccaccaaacagcttctat 372  Q
    || |||| ||| | ||||||||    
T  38605020 tgctccagcaagccgcttctat 38604999  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 41885995 - 41886035
Alignment:
Q  332 acaaggtgtagtgctgatatgatccaccaaacagcttctat 372  Q
    |||||| |||||| |||||||||||||||||| ||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctat 41886035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 44459540 - 44459667
Alignment:
Q  199 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 298  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  299 tattactatacactgcaagctcttttga 326  Q
    ||||||| ||| ||||||||||||||||    
T  44459640 tattactttactctgcaagctcttttga 44459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 44460150 - 44460412
Alignment:
Q  107 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 206  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44460249  T
Q  207 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 306  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44460250 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44460349  T
Q  307 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctat 372  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | ||||||||    
T  44460350 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctat 44460412  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 44467073 - 44467200
Alignment:
Q  199 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 298  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  299 tattactatacactgcaagctcttttga 326  Q
    ||||||| ||| ||||||||||||||||    
T  44467173 tattactttactctgcaagctcttttga 44467200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 44467683 - 44467945
Alignment:
Q  107 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 206  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44467782  T
Q  207 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 306  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44467783 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44467882  T
Q  307 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctat 372  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | ||||||||    
T  44467883 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctat 44467945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 34502382 - 34502307
Alignment:
Q  251 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttga 326  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctcttttga 34502307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 46359020 - 46359282
Alignment:
Q  107 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 206  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  46359020 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 46359119  T
Q  207 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 306  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  46359120 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 46359219  T
Q  307 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctat 372  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | ||||||||    
T  46359220 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctat 46359282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 410919 - 410974
Alignment:
Q  242 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatac 297  Q
    |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatac 410974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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