View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17792_low_3 (Length: 246)

Name: NF17792_low_3
Description: NF17792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17792_low_3
NF17792_low_3
[»] chr2 (8 HSPs)
chr2 (16-245)||(17282430-17282657)
chr2 (20-246)||(1552083-1552306)
chr2 (19-246)||(3920997-3921221)
chr2 (19-211)||(1894840-1895032)
chr2 (65-211)||(17374738-17374885)
chr2 (68-171)||(4869095-4869198)
chr2 (65-214)||(11163591-11163736)
chr2 (126-179)||(34659730-34659784)
[»] chr5 (14 HSPs)
chr5 (19-245)||(21600589-21600813)
chr5 (19-246)||(6989229-6989453)
chr5 (19-169)||(1157715-1157864)
chr5 (53-246)||(41356041-41356233)
chr5 (29-179)||(18696463-18696616)
chr5 (68-213)||(6030877-6031023)
chr5 (65-179)||(27170662-27170777)
chr5 (65-211)||(1377650-1377799)
chr5 (65-171)||(7767579-7767685)
chr5 (101-246)||(38959176-38959317)
chr5 (68-209)||(26656156-26656299)
chr5 (68-209)||(26927743-26927886)
chr5 (68-213)||(7270076-7270224)
chr5 (19-107)||(38958636-38958723)
[»] chr1 (7 HSPs)
chr1 (19-242)||(25791030-25791251)
chr1 (29-116)||(34117577-34117664)
chr1 (68-246)||(615129-615310)
chr1 (65-246)||(39709551-39709736)
chr1 (65-110)||(34654463-34654508)
chr1 (101-212)||(34653313-34653427)
chr1 (84-150)||(11408355-11408422)
[»] chr4 (8 HSPs)
chr4 (20-246)||(53201655-53201878)
chr4 (19-206)||(34227488-34227674)
chr4 (19-244)||(47518946-47519166)
chr4 (19-246)||(31360557-31360782)
chr4 (65-244)||(14566531-14566713)
chr4 (65-179)||(23054823-23054938)
chr4 (84-216)||(6409420-6409554)
chr4 (29-69)||(6409594-6409634)
[»] chr7 (7 HSPs)
chr7 (19-246)||(11698838-11699062)
chr7 (68-211)||(3301849-3301996)
chr7 (66-164)||(29550068-29550166)
chr7 (65-166)||(1778049-1778151)
chr7 (102-213)||(39020786-39020898)
chr7 (65-99)||(39020736-39020770)
chr7 (29-69)||(1778159-1778199)
[»] chr6 (6 HSPs)
chr6 (46-246)||(20739998-20740196)
chr6 (65-179)||(3524106-3524222)
chr6 (65-216)||(34213936-34214088)
chr6 (142-244)||(1869327-1869427)
chr6 (65-202)||(21880856-21880988)
chr6 (29-69)||(21880996-21881036)
[»] chr3 (4 HSPs)
chr3 (65-211)||(43275374-43275521)
chr3 (69-216)||(18270266-18270414)
chr3 (65-164)||(893491-893590)
chr3 (68-112)||(3576867-3576911)
[»] scaffold0005 (1 HSPs)
scaffold0005 (65-244)||(250662-250844)
[»] chr8 (7 HSPs)
chr8 (65-246)||(20860687-20860867)
chr8 (65-226)||(10408235-10408396)
chr8 (112-216)||(5994042-5994148)
chr8 (65-95)||(5994151-5994181)
chr8 (84-145)||(6443498-6443560)
chr8 (29-69)||(5994189-5994229)
chr8 (29-69)||(6443596-6443636)
[»] scaffold0009 (1 HSPs)
scaffold0009 (105-171)||(53927-53993)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 17282430 - 17282657
Alignment:
Q  16 tgtggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgttt 115  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17282430 tgtggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttattttggtgttt 17282528  T
Q  116 ctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggag 215  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    
T  17282529 ctatttattgatttcggagatagccctttgttaggaggcgtttcctataggtttttggatttttctttattttcacgggtgtatgagttttacattgg-g 17282627  T
Q  216 ggcttcccatcatcttttgtttgttgctac 245  Q
    |||||||||||||| |||||||||||||||    
T  17282628 ggcttcccatcatcctttgtttgttgctac 17282657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 1552083 - 1552306
Alignment:
Q  20 gtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctat 119  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  1552083 gtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtggtgttagctatgttttggtgtttctat 1552181  T
Q  120 ttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggct 219  Q
    ||||| ||||| ||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||| ||||||||||||||| |||||| | |||    
T  1552182 ttattgatttcggagatagccctttgttaggaggcgtttcttatagatttttgaatttttctttattttcatgggtgtatgggtttt-cattgg-gagct 1552279  T
Q  220 tcccatcatcttttgtttgttgctact 246  Q
    ||||| |||| ||||||||||||||||    
T  1552280 tcccaccatcctttgtttgttgctact 1552306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 3921221 - 3920997
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  3921221 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctatgttttgatgtttcta 3921123  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||||||||||||| |||||  ||||| |||||| |||||||||||||||||| |||||||||||||| |||||| |||     
T  3921122 tttattgatttcggagatagccctttgttaggaggcgtttattatagatttttgaatttttctttattttcacaggtgtatgggtttt-cattgg-gggt 3921025  T
Q  219 ttcccatcatcttttgtttgttgctact 246  Q
    || |||||||| ||||||||||||||||    
T  3921024 tttccatcatcatttgtttgttgctact 3920997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 1895032 - 1894840
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgttt-atgttgtttcgttgatcgtggtgttagatttgttttggtgtttct 117  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||    
T  1895032 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggatttttttttatgttgtttcgttgaacgtggtgttagctttgttttgatgtttct 1894934  T
Q  118 atttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccatt 211  Q
    ||||||| |||||  ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  1894933 atttattgatttcgaagatagctctttgttaggagacgttttctataagtttttggatttttctttattttcacgggtgtatggattctccatt 1894840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 17374885 - 17374738
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| ||||||||||| | ||||||| |||||||||||    
T  17374885 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatttttctatttattgatttcggagatagccctctcttaggaggcgtttcctata 17374786  T
Q  165 ggt-ttttggatttttctttattttcacgggtgtatgggttttccatt 211  Q
    ||| ||||||||||||  ||   |||||||||||||| ||||| ||||    
T  17374785 ggttttttggattttttctttgattcacgggtgtatgagtttttcatt 17374738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 4869198 - 4869095
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    |||||||||||||||||||||||   |||||| || ||||||||||||||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  4869198 tgtttatgttgtttcgttgatcgccctgttagcttggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataggt 4869099  T
Q  168 tttt 171  Q
    ||||    
T  4869098 tttt 4869095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 11163591 - 11163736
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||| ||||||||   |||||||| ||||||||||| |||||||||||| ||||  || ||||||||||||||||||  |||| |||||    
T  11163591 ttttgtttatgttgtgtcgttgat---ggtgttagctttgttttggtatttctatttattgattttggatatagccctttgttaggaggtgttttctata 11163687  T
Q  165 ggtttttggatttttctttattttcacgggtgtatgggttttccattgga 214  Q
     ||||||   ||||| ||| | |||||||||||||| ||||| |||||||    
T  11163688 agttttt-tttttttttttttattcacgggtgtatgagtttttcattgga 11163736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 34659784 - 34659730
Alignment:
Q  126 atttcagagatagccctttgttaggagacgtttcctata-ggtttttggattttt 179  Q
    ||||||||| ||| ||||||||||||| ||||||||||| | |||||||||||||    
T  34659784 atttcagagttagtcctttgttaggaggcgtttcctatatgttttttggattttt 34659730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 21600813 - 21600589
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  21600813 ggtggtaga-agttgtttttgtggcagttgtgacgatgtttgaggattttgtttatgttgtttcgttgttcgtgatgttagctttgttttggtgtttcta 21600715  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21600714 tttattgattccagatatagtcctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattgg-gggc 21600616  T
Q  219 ttcccatcatcttttgtttgttgctac 245  Q
    ||||||||||| |||||||||||||||    
T  21600615 ttcccatcatcatttgtttgttgctac 21600589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 6989453 - 6989229
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6989453 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgtttttgtgtttcta 6989355  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||| || |    
T  6989354 tttattgatttcggagatagccctttgttaggagacgtttcctataggtttttgga-ttttctttattttcacaggtgtatgagtttttcattgg-ggac 6989257  T
Q  219 ttcccatcatcttttgtttgttgctact 246  Q
    ||||||||||| ||||||||||||||||    
T  6989256 ttcccatcatcctttgtttgttgctact 6989229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 1157715 - 1157864
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1157715 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttcta 1157813  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggttt 169  Q
    |||||| ||||| ||||||||| ||||||||||| |||||| |||||||||    
T  1157814 tttattgatttcggagatagccatttgttaggaggcgtttcttataggttt 1157864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 41356041 - 41356233
Alignment:
Q  53 gatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggag 152  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||  ||||||| |||||||||||||    
T  41356041 gatgcttggggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttattgattttggagatagtcctttgttaggag 41356140  T
Q  153 acgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatcatcttttgtttgttgctact 246  Q
      ||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||| || |  ||||| ||||||||||||||||    
T  41356141 gtgttacctataggtttttggatttttctttattttcatgggtttatgtgttttccattgg-gggttttctctcatcctttgtttgttgctact 41356233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 18696616 - 18696463
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatt 128  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||    
T  18696616 agttgttattgtggcagttgcgacgatgcttgaggattttgtttatgttgtttctttgatcatggtgttagctttgttttggtgtttctatttattgatt 18696517  T
Q  129 tcagagatagccc---tttgttaggagacgtttcctataggtttttggattttt 179  Q
    || ||||||||||   ||| ||||||| |||||| ||||| |||||| ||||||    
T  18696516 tcggagatagccctcatttattaggaggcgtttcttatagttttttgaattttt 18696463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 6030877 - 6031023
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctat-agg 166  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||| |||||||| |||||| |||||||||| ||     
T  6030877 tgtttatgttgtttcgttgatcgtgctgttagattggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataagt 6030976  T
Q  167 tttttggatttttctttattttcacgggtgtatgggttttccattgg 213  Q
    |||||||||||||  ||   |||||||||||||||||||||||||||    
T  6030977 tttttggattttttatttgattcacgggtgtatgggttttccattgg 6031023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 27170662 - 27170777
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||||||||||| |||||||||||    
T  27170662 ttttgtttatgttgtttcattgatcgtggtgttagctttgttttggtgtttctatttattggtttcggagatagccatttgttaggaggcgtttcctata 27170761  T
Q  165 ggttttt-ggattttt 179  Q
    ||||||| ||||||||    
T  27170762 ggtttttcggattttt 27170777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 1377799 - 1377650
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacg--tttccta 162  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||||| ||  |||||||    
T  1377799 ttttgattatgttgtttcgttgatcgtggtgttagttttgttttggtgtttctatttattaatttcggagataatcctttgttaggaggcgtttttccta 1377700  T
Q  163 taggtttttggatttttct-ttattttcacgggtgtatgggttttccatt 211  Q
    ||| ||||||||||||| | ||   |||| |||||||||||| |||||||    
T  1377699 tagttttttggatttttttctttgattcatgggtgtatgggtcttccatt 1377650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 7767579 - 7767685
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||  |||||| |||||||||||||| |||||||||||    
T  7767579 ttttgtttatgttgttccgttgatcgtggtgttagctttgttttggtgtttatatttattgattttggagataaccctttgttaggaggcgtttcctata 7767678  T
Q  165 ggttttt 171  Q
    |||||||    
T  7767679 ggttttt 7767685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 38959176 - 38959317
Alignment:
Q  101 tttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatg 200  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||    
T  38959176 tttgttttggtgtttctatttattgatt-cggagatagccctttgttaggaggcgtttcctataggtttttcgatttttcttta-tttcacgggtgcatg 38959273  T
Q  201 ggttttccattggagggcttcccatcatcttttgtttgttgctact 246  Q
    ||||||||| ||  ||| ||  ||||||  ||||||||||||||||    
T  38959274 ggttttccaatg--gggtttttcatcatactttgtttgttgctact 38959317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 26656299 - 26656156
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||| ||| ||| ||||||||||||| ||||||||||||||    
T  26656299 tgtttatgttgtttcgttgatcgtgttgttagtttggttttggtgtttctattaattgatttcggagttagtcctttgttaggaggcgtttcctataggt 26656200  T
Q  168 ttt-tggatttttct-ttattttcacgggtgtatgggttttcca 209  Q
    ||| ||||||||| | ||   |||||||||||||| ||||||||    
T  26656199 tttatggatttttttcttcgattcacgggtgtatgagttttcca 26656156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 26927886 - 26927743
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||| ||| ||| ||||||||||||| ||||||||||||||    
T  26927886 tgtttatgttgtttcgttgatcgtgttgttagtttggttttggtgtttctattaattgatttcggagttagtcctttgttaggaggcgtttcctataggt 26927787  T
Q  168 ttt-tggatttttct-ttattttcacgggtgtatgggttttcca 209  Q
    ||| ||||||||| | ||   |||||||||||||| ||||||||    
T  26927786 tttatggatttttttcttcgattcacgggtgtatgagttttcca 26927743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 7270224 - 7270076
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||| |||||||||||||||   ||||||||||||||    
T  7270224 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagagttagccctttgttaggttgcgtttcctataggt 7270125  T
Q  168 --ttttggatttttct-ttattttcacgggtgtatgggttttccattgg 213  Q
      |||||||||||| | ||   ||||||||||||||  |||||||||||    
T  7270124 ttttttggatttttttcttcgattcacgggtgtatgaattttccattgg 7270076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 38958636 - 38958723
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttt 107  Q
    ||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  38958636 ggtggtaga-agttgtttttgtgtcagtagtgacgatgcttgaggattttgtttatgttgtttcgttgatcatgttgttagctttgttt 38958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 25791251 - 25791030
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  25791251 ggtggtaga-agttgtttttgtgacagttgtgacgatgcttgaggattttgtttatgttgtttcattgatcgtggtgttagctttgttttgatgtttcta 25791153  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25791152 tttattgatttcggagatagccctatgttaggagacatatcctataggtttttggatttttctttattttcacgggtgtatgggttttccatt-gagggt 25791054  T
Q  219 ttcccatcatcttttgtttgttgc 242  Q
    || |||||||| ||||||||||||    
T  25791053 tttccatcatcatttgtttgttgc 25791030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 34117664 - 34117577
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttc 116  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34117664 agttgtttttgtggcagttgcaacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttc 34117577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 615310 - 615129
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    |||||||||||||| |||||||||| |||||| || ||||||||||||||||| ||| |||||||| ||| ||||||| |||||| | |||||||||| |    
T  615310 tgtttatgttgttttgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagatataaccctttgctaggaggcatttcctatagtt 615211  T
Q  168 tttt---ggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctact 246  Q
    ||||   ||||||||  ||   ||||||||||||||| ||||||||||| ||||| |||||| ||| ||||| ||||||||||    
T  615210 tttttttggattttttctttgattcacgggtgtatggattttccattgg-gggctccccatctatcctttgtatgttgctact 615129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 39709551 - 39709736
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| || | |||||||||||||  |||||| | ||    
T  39709551 ttttgtttttgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattggtttcagggacaaccctttgttaggaagcgtttctttta 39709650  T
Q  165 gg-tttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttc-ccatc-atcttttgtttgttgctact 246  Q
    || ||||||||||||| ||  ||  ||||||||| |||| |||||||||| | ||||| | ||||| ||||||||| ||||||||||    
T  39709651 ggttttttggattttttttctttgattcacgggtatatgagttttccatttg-gggctcctccatctatcttttgtatgttgctact 39709736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 34654508 - 34654463
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttgg 110  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  34654508 ttttgtttatgttgtttcgttgatcgtgatgttagctttgttttgg 34654463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 34653427 - 34653313
Alignment:
Q  101 tttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctatag-gtttttggatttttctttatt--ttcacgggtgt 197  Q
    |||||||||||||||| | | ||| ||||| || ||| ||||||||||||||  |||||||||||  ||||||||||||| ||  ||  |||||||||||    
T  34653427 tttgttttggtgtttccactcattgatttcggatataaccctttgttaggaggtgtttcctatagtttttttggattttttttctttgattcacgggtgt 34653328  T
Q  198 atgggttttccattg 212  Q
    ||| ||||| |||||    
T  34653327 atgagtttttcattg 34653313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 11408355 - 11408422
Alignment:
Q  84 ttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttagg 150  Q
    ||||| |||||||||| |||||||| ||||||||  |||||| ||||| |||||||| ||||||||||    
T  11408355 ttgattgtggtgttagctttgtttttggtgtttccttttattgatttcggagatagctctttgttagg 11408422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 53201878 - 53201655
Alignment:
Q  20 gtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctat 119  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||    
T  53201878 gtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtgatgttagctttgttttggtgtttctat 53201780  T
Q  120 ttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggct 219  Q
    ||||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||| |    
T  53201779 ttattgatttcggagatagccctttgttaggaggtgtttcctataggtttttggatttttatttattttcacgggtgtatggattttccattg--ggggt 53201682  T
Q  220 tcccatcatcttttgtttgttgctact 246  Q
    | |||||||| ||||||| ||| ||||    
T  53201681 ttccatcatcctttgtttattgttact 53201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 34227488 - 34227674
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34227488 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttcta 34227586  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggtttt 206  Q
    |||||| ||||| ||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34227587 tttattgatttcggagatagccctttgttaagaggtgattcctataggtttttggatttttctttattttcacgggtgtatggatttt 34227674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 47518946 - 47519166
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||| |||||| ||||||   ||||||||| ||||||||| |||||||||||||||| |    
T  47518946 ggtggtaga-agttgtttttgtggcagttgtggcgatgcttgaggtttttgtatatgtt---tcgttgatcctggtgttagctttgttttggtgtttcga 47519041  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||    
T  47519042 tttattgatttcggagatagccctttgttaggaggcatttccaataggtttttggatttttctttattctcgtgggtgtatgggttttccattgg-gggc 47519140  T
Q  219 ttcccatcatcttttgtttgttgcta 244  Q
    ||||||||||| ||||||||||||||    
T  47519141 ttcccatcatcctttgtttgttgcta 47519166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 31360557 - 31360782
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| || | ||||||||||| |||| ||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||    
T  31360557 ggtggtaga-agttgtttttgtggtaattgtgacgatgtttgaagattttgtttatgttgtgtcgttgatcgtgatgttagttttgttttagtgtttcta 31360655  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||  || |||||  |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  31360656 tttattgattttggaaatagcattttgttaggagacgttttttataggtttttggatttttctatattttcacgggtgtatgggtttttcattgg-gggc 31360754  T
Q  219 ttcccatcatcttttgtttgttgctact 246  Q
    ||||||||||| ||||| ||||||||||    
T  31360755 ttcccatcatcatttgtgtgttgctact 31360782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 14566531 - 14566713
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||    
T  14566531 ttttgtttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 14566630  T
Q  165 -ggtttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgcta 244  Q
     ||||||||||||||| ||  ||  |||||||||||||| | |||||||||| ||||| |||||| ||| ||||| ||||||||    
T  14566631 gggtttttggattttttttctttgattcacgggtgtatgaggtttccattgg-gggctccccatctatcatttgtatgttgcta 14566713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 23054823 - 23054938
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||   |||  ||||||  |||||||||||||  |||| |||||    
T  23054823 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttatagtttttggagataatcctttgttaggaggtgttttctata 23054922  T
Q  165 ggtttt-tggattttt 179  Q
    |||||| |||||||||    
T  23054923 ggttttatggattttt 23054938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 6409554 - 6409420
Alignment:
Q  84 ttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttct- 181  Q
    ||||| |||||||||| |||||||| |||||||   |||||| |||||  |||||||||||||||||  ||  ||| |||||||||||| || | || |     
T  6409554 ttgattgtggtgttagctttgtttttggtgttttcttttatttatttcgaagatagccctttgttagatgatattttctataggttttttgaatattatc 6409455  T
Q  182 ttattttcacgggtgtatgggttttccattggagg 216  Q
    ||   | ||||||||||||||||||||||||||||    
T  6409454 tttgatgcacgggtgtatgggttttccattggagg 6409420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 6409634 - 6409594
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  6409634 agttgtttttgtggcagttgtgatgatgtttgaggattttg 6409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 11698838 - 11699062
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |  |||||||||||||||||    
T  11698838 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgatgattttgtttatgttgtttcgttgctcgaggtgttcgcattgttttggtgtttcta 11698936  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||| |||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||    
T  11698937 tttattgatttcggagatggccctttgttaggaggtatttcctatcggtttttggatttttctttattttcacgggtgtatgggttttctatttg-gggc 11699035  T
Q  219 ttcccatcatcttttgtttgttgctact 246  Q
    || | |||||| ||||||||||||||||    
T  11699036 tt-ctatcatcctttgtttgttgctact 11699062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 3301996 - 3301849
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttg-ttaggagacgtttcctatagg 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||| ||||||| |||||||| || |    
T  3301996 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgattttagagatagccatttgtttaggaggcgtttcctctaag 3301897  T
Q  167 ttttt-ggatttttctttatt--ttcacgggtgtatgggttttccatt 211  Q
    ||||| |||||||| ||  ||  ||||| |||||||||||||||||||    
T  3301896 tttttaggattttttttctttgattcacaggtgtatgggttttccatt 3301849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 29550166 - 29550068
Alignment:
Q  66 tttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| |||||    
T  29550166 tttgtttatgttgtttcgttgatcgtggtgttagctttattttggtgtttctatttattgatttcggagatagccctttgttatgaggcgttttctata 29550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 1778151 - 1778049
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctat 163  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||| |||||||||||| | ||||| || ||| | ||||||||    
T  1778151 ttttgtttatgttgtttcgttgatcgtggtgataactttgtttttggtgtttctatttattgatttcagagataactctttgatacgaggcatttcctat 1778052  T
Q  164 agg 166  Q
    |||    
T  1778051 agg 1778049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 39020786 - 39020898
Alignment:
Q  102 ttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctatagg-tttttggatttttctttattttcacgggtgtatg 200  Q
    ||||||||||||||||||||||| ||||| || |||| | ||||||||||| ||||||| ||||| |||||||||||||| ||   |||||  ||||||     
T  39020786 ttgttttggtgtttctatttattgatttcggatatagtcatttgttaggaggcgtttcccataggttttttggatttttcctttgattcacatgtgtatc 39020885  T
Q  201 ggttttccattgg 213  Q
     ||||||||||||    
T  39020886 agttttccattgg 39020898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 39020736 - 39020770
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttag 99  Q
    |||||||||||||||||||||||| ||||||||||    
T  39020736 ttttgtttatgttgtttcgttgattgtggtgttag 39020770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 1778199 - 1778159
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| |||||||||||| ||| ||||||||||||    
T  1778199 agttgtttttgtggcagttgtgacaatgtttgaggattttg 1778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 20740196 - 20739998
Alignment:
Q  46 ttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttg 145  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||| ||||| ||||||||||||||    
T  20740196 ttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtggtgttagctatattttggtgtttctatttattgatttcggagatagccctttg 20740097  T
Q  146 ttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatcatcttttgtttgttgctac 245  Q
    ||||||| |||||| ||||| |||||| ||||||||||||||||| ||||||| ||||||| |||||| |||||||| | |||| |||||||||||||||    
T  20740096 ttaggaggcgtttcttatagatttttgaatttttctttattttcatgggtgtaggggtttt-cattgg-gggcttccaaccatcctttgtttgttgctac 20739999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 3524106 - 3524222
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgtt-ttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctat 163  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| ||||  ||||||||||||||||| ||| ||||||||||    
T  3524106 ttttgtttatgttgtttcgttgatcatggtgatagctttgttgttggtgtttctatttattgattttggagatagccctttgttaagaggcgtttcctat 3524205  T
Q  164 ag-gtttttggattttt 179  Q
    ||  |||||||||||||    
T  3524206 agattttttggattttt 3524222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 34213936 - 34214088
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||| | |||||||||  |||| ||||||| ||||||||||||| | ||| |||||    
T  34213936 ttttgtttatgttgttttgttgatcgtggtgttaactttgttttggtgctactatttattgttttcggagatagtcctttgttaggaggcattttctata 34214035  T
Q  165 ggtttttg-gatttttctttattttcacgggtgtatgggttttccattggagg 216  Q
    |||||||  |||||||  ||   ||||| |||||||| |||||||||||||||    
T  34214036 ggtttttttgattttttctttgattcacaggtgtatgagttttccattggagg 34214088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 1869427 - 1869327
Alignment:
Q  142 tttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatcatcttttgtttgttg 241  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||| |||||  ||||||||||||||| |||||||||||    
T  1869427 tttgttaggaggcgtttccaataggtttttggatttttctttattttcagggatgtatgagttttacattg--gggcttcccatcatcctttgtttgttg 1869330  T
Q  242 cta 244  Q
    |||    
T  1869329 cta 1869327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 21880988 - 21880856
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| |        ||  |||  |||||||||||||||| |||| |||||||||||    
T  21880988 ttttgtttatgttgcttcgttgatcgtggtgttagctttgttttggtgct--------ttgtttttggagatagccctttgttgggaggcgtttcctata 21880897  T
Q  165 gg-tttttggatttttctttatt--ttcacgggtgtatggg 202  Q
    || ||||||||||||| ||  ||  ||||||||||||||||    
T  21880896 ggttttttggattttttttctttgattcacgggtgtatggg 21880856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 21881036 - 21880996
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    |||| |||||| |||||||||||||||| ||||||||||||    
T  21881036 agttatttttgtggcagttgtgacgatgtttgaggattttg 21880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 43275521 - 43275374
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |||||    
T  43275521 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatgtttctatttattgatttcggagatagccctttgttaggacacgttttctata 43275422  T
Q  165 ggt-ttttggatttttctttattttcacgggtgtatgggttttccatt 211  Q
    ||| |||||||||||| ||| | |||||  |||||||| |||||||||    
T  43275421 ggttttttggatttttttttttattcacaagtgtatggattttccatt 43275374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 18270266 - 18270414
Alignment:
Q  69 gtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctatagg-t 167  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| |||||||||||||| ||||| |||||| ||||||||||||| |    
T  18270266 gtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagagatagctctttgctaggaggcgtttcctataggtt 18270365  T
Q  168 ttttggatttttctttattttcacgggtgtatgggttttccattggagg 216  Q
    ||||||||||||  ||   |||||||||||||||||||| |||||||||    
T  18270366 ttttggattttttctttgattcacgggtgtatgggtttttcattggagg 18270414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 893491 - 893590
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  893491 ttttatttatgttttttcattgatcgtggtgttagctttgttttggtgtttctatttattgatttcagagatagccctttgttaggaggcgtttcctata 893590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 3576867 - 3576911
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtg 112  Q
    ||||||||||||||||||||||||| |||||| || |||||||||    
T  3576867 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtg 3576911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 250844 - 250662
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||    
T  250844 ttttgtttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 250745  T
Q  165 -ggtttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgcta 244  Q
     ||||||||||||||| ||  ||  |||||||||||||| | |||||||||| ||||| |||||| ||| ||||| ||||||||    
T  250744 gggtttttggattttttttctttgattcacgggtgtatgaggtttccattgg-gggctccccatctatcatttgtatgttgcta 250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 246
Target Start/End: Complemental strand, 20860867 - 20860687
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||  |||| ||||||||||||| ||||||| |||||||||||    
T  20860867 ttttgtttatgttgtttcgttgattgcggtgttagctttgttttggtgtttctatttattggtttcggagatagcccttttttaggaggcgtttcctata 20860768  T
Q  165 ggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctact 246  Q
    |  ||||||||||||||||   |||||  ||||||| |||||||||||| | ||| |||||| ||| ||||| ||||||||||    
T  20860767 gtgttttggatttttcttt-gattcacttgtgtatgagttttccattgg-gagctccccatctatcctttgtatgttgctact 20860687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 10408396 - 10408235
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||| |||||| ||| |||||  ||| |||||||||||||||||||| ||||| |||||| ||||||||||||||  ||||||||||    
T  10408396 ttttgtttatgttgtttagttgattgtgatgttaactttattttggtgtttctatttattgatttcggagataaccctttgttaggaggtgtttcctata 10408297  T
Q  165 ggt-ttttggatttt-tctttattttcacgggtgtatgggttttccattggagggcttcccatc 226  Q
    ||| ||||||||||| |||||   |||| |||||||||||||||||||||| ||||| ||||||    
T  10408296 ggttttttggattttatcttt-gattcatgggtgtatgggttttccattgg-gggctccccatc 10408235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 5994148 - 5994042
Alignment:
Q  112 gtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-gga--tttttctttattttcacgggtgtatgggttttcc 208  Q
    |||||||| |||| |||||  | ||||| |||||||||||| |||||||||||||||||| |||  |||||||||  |  ||||||||||||||||||||    
T  5994148 gtttctatctattgatttcgaatatagctctttgttaggaggcgtttcctataggttttttggaattttttctttgatg-cacgggtgtatgggttttcc 5994050  T
Q  209 attggagg 216  Q
    ||||||||    
T  5994049 attggagg 5994042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 5994181 - 5994151
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtg 95  Q
    |||||||||||||||||||||||||||||||    
T  5994181 ttttgtttatgttgtttcgttgatcgtggtg 5994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 6443560 - 6443498
Alignment:
Q  84 ttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttg 145  Q
    ||||| |||||||||| |||||||| ||||||||  |||||| |||| |||||||||||||||    
T  6443560 ttgattgtggtgttagctttgtttttggtgtttccttttattgattttagagatagccctttg 6443498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 5994229 - 5994189
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| || ||||||||||||| ||||||||||||    
T  5994229 agttgtttttgtggtagttgtgacgatgtttgaggattttg 5994189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 6443636 - 6443596
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  6443636 agttgtttttgtggcagttgtgatgatgtttgaggattttg 6443596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 53993 - 53927
Alignment:
Q  105 ttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt 171  Q
    ||||||||||||  |||||| ||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  53993 ttttggtgtttccttttattgattttggagatatccctttgttaggagatgtttcctgtaggttttt 53927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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