View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17792_low_4 (Length: 241)

Name: NF17792_low_4
Description: NF17792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17792_low_4
NF17792_low_4
[»] chr2 (8 HSPs)
chr2 (28-199)||(13415154-13415325)
chr2 (28-203)||(6728271-6728446)
chr2 (35-199)||(27951916-27952079)
chr2 (35-202)||(2208317-2208482)
chr2 (74-203)||(36930701-36930831)
chr2 (28-86)||(18828128-18828186)
chr2 (28-58)||(32479082-32479112)
chr2 (28-100)||(1467477-1467549)
[»] chr8 (4 HSPs)
chr8 (28-199)||(39297971-39298142)
chr8 (35-203)||(4311328-4311496)
chr8 (35-203)||(8565151-8565319)
chr8 (28-162)||(38732639-38732774)
[»] chr1 (6 HSPs)
chr1 (28-199)||(28381434-28381605)
chr1 (28-203)||(5597958-5598132)
chr1 (28-203)||(30713373-30713549)
chr1 (35-133)||(38225655-38225753)
chr1 (28-172)||(3873805-3873949)
chr1 (28-62)||(40703928-40703962)
[»] chr3 (3 HSPs)
chr3 (28-199)||(6985375-6985544)
chr3 (28-199)||(8129425-8129593)
chr3 (35-203)||(19982159-19982327)
[»] chr4 (7 HSPs)
chr4 (28-198)||(17874366-17874537)
chr4 (28-196)||(22877966-22878133)
chr4 (82-196)||(23131310-23131423)
chr4 (35-203)||(19163670-19163827)
chr4 (35-203)||(54684087-54684256)
chr4 (35-180)||(50016068-50016214)
chr4 (28-81)||(23131494-23131547)
[»] chr5 (3 HSPs)
chr5 (28-199)||(35836680-35836851)
chr5 (35-203)||(36255257-36255425)
chr5 (120-203)||(33018919-33019002)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-199)||(45306-45416)
[»] chr7 (5 HSPs)
chr7 (35-203)||(45166053-45166220)
chr7 (28-203)||(2317377-2317553)
chr7 (28-136)||(42964690-42964797)
chr7 (35-202)||(39693950-39694116)
chr7 (35-203)||(6344134-6344303)
[»] scaffold0351 (1 HSPs)
scaffold0351 (35-193)||(13496-13654)
[»] scaffold0750 (1 HSPs)
scaffold0750 (28-157)||(5688-5815)
[»] chr6 (3 HSPs)
chr6 (29-203)||(33820904-33821079)
chr6 (35-203)||(28633747-28633917)
chr6 (35-203)||(15601801-15601970)
[»] scaffold0124 (1 HSPs)
scaffold0124 (128-157)||(22147-22176)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 13415154 - 13415325
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  13415154 aacaaacaaaaatggattatattaacactactaaagcagccctctcagcacaagatgtaccgaaaagactacttaaaacgatacaagcagtttaaaaaat 13415253  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13415254 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 13415325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 6728446 - 6728271
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||| |||||| |||||||||||||| |||||||||||| |||||    
T  6728446 aacaaacaaaaatggattatattaacactgctaaagcagccctttcagcataagatgtaccgaaaagactacttaaaacgaaacaagcagtttacaaaat 6728347  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6728346 tacaataaattgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacacaaaaaca 6728271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 27952079 - 27951916
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    ||||||||||||||||| |||||||||||||| || ||  ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||    
T  27952079 aaaaatggattatattaccactgctaaagcagtcccctcggcataagatgtaccgaaaagactacttaaaacgatacaagcagtttaaaaaat-acaaca 27951981  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27951980 agttgtcaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 27951916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 2208482 - 2208317
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    ||||||||| ||||||||||||||| ||  |||||| | |||| ||| |||| ||||||| |||||||  |||| |||  ||||||| ||||| |||||     
T  2208482 aaaaatggaatatattaacactgcttaaatagccctttcagcataaggtgtaccgaaaaa-ctacttagcacgaaacacacagtttacaaaat-acaacc 2208385  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaac 202  Q
    |   |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  2208384 aaaagttagccaatgcctaaacaagacaatggattcgacatccacatctgatcaccaaacacaaaaac 2208317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 36930701 - 36930831
Alignment:
Q  74 agcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaattacaacaagttgttaaccaatgcctaaacacgacaatggattcga 172  Q
    ||||||||||||| |||||| ||||||  ||| ||||||||  | | |||  |||||||| |||| ||||||||||||||||||||||||  ||  ||||    
T  36930701 agcacaagatgtaccgaaaagactactataaaagatacaagttggtctaagtaattacaagaagtggttaaccaatgcctaaacacgacatagggctcga 36930800  T
Q  173 caaccacatctgatcaccaaacataaaaaca 203  Q
    | ||||||  |||||||||||| ||||||||    
T  36930801 ccaccacaaatgatcaccaaacgtaaaaaca 36930831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 18828128 - 18828186
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgta 86  Q
    |||||| ||||||||||||||||||||||||   ||||| ||||| | |||||||||||    
T  18828128 aacaaacaaaaatggattatattaacactgcactagcagtcctctcaacacaagatgta 18828186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 58
Target Start/End: Original strand, 32479082 - 32479112
Alignment:
Q  28 aacaaataaaaatggattatattaacactgc 58  Q
    |||||||||||||||||||||||||||||||    
T  32479082 aacaaataaaaatggattatattaacactgc 32479112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 1467477 - 1467549
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactact 100  Q
    |||||| |||||||||||| ||||||||||||| | ||| ||||| | |||||| |||| | |||| ||||||    
T  1467477 aacaaacaaaaatggattagattaacactgctataacagtcctctcaacacaaggtgtaccaaaaagactact 1467549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 39298142 - 39297971
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||| |||||    
T  39298142 aacaaacaaaaatgaattatattaacactgctaaagcagccctctcagcacaagatgtaccgaaaagactacttaaaacgaaacaagcagtttacaaaat 39298043  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39298042 tacaacaagtggttaaccaatgcctaaacacgacaatgaattcgacaaccacatctgatcaccaaacataaa 39297971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 4311496 - 4311328
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    ||||||||||||||||||||||||||||  |||||| | |||||||| ||||||||||| |||||||||||||| |||||||||||| || |||||||||    
T  4311496 aaaaatggattatattaacactgctaaaatagccctttcagcacaaggtgtatcgaaaagactacttaaaacgaaacaagcagtttacaagattacaaca 4311397  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |  ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  4311396 aaatgttaaccaatgcttaaacaggacaatggattcgacacccacatctgatcaccaaacacaaaaaca 4311328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 8565319 - 8565151
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    |||||||||||||||||||||| | |||  |||||| | ||||||||||||| ||||||||||||| ||||||| || ||||||||| |  |||||||||    
T  8565319 aaaaatggattatattaacacttcaaaaatagccctttcagcacaagatgtaccgaaaaaactactaaaaacgagaccagcagtttacacgattacaaca 8565220  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||    
T  8565219 aaatgttaaccaatgcctaaacaagacaatggattcgacacccacatctgatcaccaaaaacaaaaaca 8565151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 38732774 - 38732639
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagttta-aaaaa 126  Q
    |||||| ||||||||||||||||||||||| || | |||  |||| |||||||| || | ||| || ||| || |||| || | |||||||| | || ||    
T  38732774 aacaaacaaaaatggattatattaacactgatatatcagttctctcagcacaaggtgcaccgagaagactcctaaaaatgaaagaagcagttcacaagaa 38732675  T
Q  127 ttacaacaagttgttaaccaatgcctaaacacgaca 162  Q
    |||||||| || |||| ||||||| |||| ||||||    
T  38732674 ttacaacaggtggttatccaatgcataaatacgaca 38732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 28381434 - 28381605
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||| ||||||| |||||||||| | |||||    
T  28381434 aacaaataaaaatggattatattaacattgctaaagcagccctctcagcacaagatgtaccgaaaagactactaaaaacgaaacaagcagttcacaaaat 28381533  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28381534 tacaacaagtggttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 28381605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 5598132 - 5597958
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  5598132 aacaaacaaaaatggaatatattaacactgctaaagcagccccctcagcacaagatgtaccgaaaagactacttaaaacgatacaagcagttta-aaaat 5598034  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    ||||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  5598033 tacaacaagtttttaaccaatacctaaacacaacaatgggttcgacaaccacatctgatcaccaaacataaaaaca 5597958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 30713549 - 30713373
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaa 126  Q
    |||||| |||||||||||||||||||||| | | ||||  | ||  ||||||||||||| ||||||| ||| |  ||| ||||||||||||| | || ||    
T  30713549 aacaaacaaaaatggattatattaacactaccatagcaatcttcacagcacaagatgtaccgaaaaagctattagaaaagatacaagcagttctcaagaa 30713450  T
Q  127 ttacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |||||| |||| |||| |||||||||||||||||||   || ||||| ||||||  |||||||||||||||||||||    
T  30713449 ttacaagaagtggttatccaatgcctaaacacgacatgagactcgaccaccacaattgatcaccaaacataaaaaca 30713373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 38225655 - 38225753
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaac 133  Q
    ||||||||||||||||||||||||||||  |||||| | |||||||| |||| |||||||||||||||| |||| |||  ||||||| || ||||||||    
T  38225655 aaaaatggattatattaacactgctaaaatagccctttcagcacaaggtgtaccgaaaaaactacttaacacgaaacacacagtttacaagattacaac 38225753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 3873805 - 3873949
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaa--gcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaa-a 124  Q
    |||||| |||||||||||||||||| | || || |  |||| ||| |||| | ||| ||||||||||| |||||| ||||  | |||||||||| | | |    
T  3873805 aacaaacaaaaatggattatattaa-agtgttatatagcagtccttttagtataaggtgtatcgaaaagactactaaaaa--aaacaagcagttcacata 3873901  T
Q  125 aattacaacaagttgttaaccaatgcctaaacacgacaatggattcga 172  Q
    || |||||||||| ||||  ||||||||||||||||||||||| ||||    
T  3873902 aaatacaacaagtggttagtcaatgcctaaacacgacaatggactcga 3873949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 40703928 - 40703962
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaa 62  Q
    |||||| ||||||||||||||||||||||||||||    
T  40703928 aacaaacaaaaatggattatattaacactgctaaa 40703962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 6985375 - 6985544
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || | ||||||||||| |||||| |||||||||||||||||||| ||||||||||      
T  6985375 aacaaacaaaaatggaatatattaacactgctaaagcagcccactcaacacaagatgtaccgaaaagactacttaaaacgatacaagtagtttaaaaa-- 6985472  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6985473 tacaacaagttgttatccaatgcctaaacacgacaatggattcgatacccacatctgatcaccaaacataaa 6985544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 8129425 - 8129593
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||| | |||||||||||||||| |||||||||||      
T  8129425 aacaaacaaaaatggaatatattaacactgctaaagcagcccactcagcacaaaatgtaccgaaaaa-caacttaaaacgatacaaacagtttaaaaa-- 8129521  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8129522 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacacccacatctgatcaccaaacataaa 8129593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 19982327 - 19982159
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    |||||||||||||||||||| |||||||  |||||| | | ||||||  ||| ||||||||||||||||||||| ||| | |||||| || |||||||||    
T  19982327 aaaaatggattatattaacattgctaaaatagccctttcaacacaaggagtaccgaaaaaactacttaaaacgaaacacgtagtttacaagattacaaca 19982228  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |  |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||    
T  19982227 aaatgttaaccaatgcctaaacaggacaatggattcgatagccacatctgatcaccaaacacaaaaaca 19982159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 17874366 - 17874537
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaacta-cttaaaacgatacaagcagtttaaaaaa 126  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||| |||||||||| |||| ||||||| | ||    
T  17874366 aacaaacaaaaattgattatattaacactgctaaagcagccctctcagcacatgatgtaccgaaaagactaacttaaaacgaaacaaacagtttacataa 17874465  T
Q  127 ttacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataa 198  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17874466 ttacaacaagtggttaaccaatgcctaaacacgacaatggattcgacaaccacatctaatcaccaaacataa 17874537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 22878133 - 22877966
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| || | ||||||||||| |||||| ||| ||||||||||||||||||||||||||| |    
T  22878133 aacaaacaaaaatggaatatattaacactgttaaagcagccccctcaacacaagatgtaccgaaaagactgcttaaaacgatacaagcagtttaaaaa-t 22878035  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacat 196  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  22878034 tacaacaagttgttaacctatgcctaaacacgacaatgggttcgacaaccatatctgatcaccaaacat 22877966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 23131423 - 23131310
Alignment:
Q  82 atgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacat 181  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||  |||||||||||||||||||| ||||||||||||||    
T  23131423 atgtaccgaaaagactacttaaaacgatacaagcagattaaaaa-ttacaacaagttattaacttatgcctaaacacgacaatgggttcgacaaccacat 23131325  T
Q  182 ctgatcaccaaacat 196  Q
    ||||| |||||||||    
T  23131324 ctgattaccaaacat 23131310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 19163827 - 19163670
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    |||||||||||||||||||||||| |||  |||| | | ||||||| || ||||||||||||||||| ||||||||| ||           |||||||||    
T  19163827 aaaaatggattatattaacactgcaaaaatagccttttcagcacaatatatatcgaaaaaactacttcaaacgataccag-----------attacaaca 19163739  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  19163738 aaatgttaaccaatgcctaaacaagacaatggattcgacacccacatctgatcaccaaacacaaaaaca 19163670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 54684087 - 54684256
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaattacaac 133  Q
    |||||||||||||||||||||||| | ||||  | ||  ||||||||||||| |||||| ||||||  ||| ||||||||||||  | || ||||||||     
T  54684087 aaaaatggattatattaacactgccatagcaatcttcacagcacaagatgtaccgaaaagactactagaaaagatacaagcagtcctcaagaattacaag 54684186  T
Q  134 aagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    | || ||||||||||||||||| ||||||  ||| ||||| |||| |  |||||||||||||||||||||    
T  54684187 acgtggttaaccaatgcctaaatacgacatgggactcgaccaccataattgatcaccaaacataaaaaca 54684256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 50016214 - 50016068
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaattacaac 133  Q
    |||||||||||||||||||||||| | ||||  | ||  ||||||||||||| |||||| ||||||  ||| ||||||||| ||| | || ||||||||     
T  50016214 aaaaatggattatattaacactgccatagcaatcttcacagcacaagatgtaccgaaaagactactataaaagatacaagctgttctcaataattacaag 50016115  T
Q  134 aagttgttaaccaatgcctaaacacgacaatggattcgacaaccaca 180  Q
    |||| ||||||||||||||||||||||||  ||| ||||| ||||||    
T  50016114 aagtggttaaccaatgcctaaacacgacatgggactcgaccaccaca 50016068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 23131547 - 23131494
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaag 81  Q
    |||||| ||||||| | |||||||||||||||||| |||||| || ||||||||    
T  23131547 aacaaacaaaaatgaactatattaacactgctaaaacagccccctcagcacaag 23131494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 35836680 - 35836851
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||| |||||||||||||||||| ||||| ||||| ||||||||||||| |||||| |||||| ||||||  ||||||| || | |||||    
T  35836680 aacaaacaaaaatgaattatattaacactgctatagcagtcctctcagcacaagatgtaccgaaaagactactaaaaacggaacaagcatttcacaaaat 35836779  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaa 199  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35836780 tacaacaagtggttaaccaatgcctaagcacgacaatggattcgacaaccacatctgatcaccaaacataaa 35836851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 36255257 - 36255425
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    ||||||||||||||||||||||||  |   |||||| | |||||||| |||| |||||| ||||||||||||||  ||| ||||||| ||||||||||||    
T  36255257 aaaaatggattatattaacactgcacatatagccctttcagcacaaggtgtaccgaaaagactacttaaaacgaaccaaacagtttacaaaattacaaca 36255356  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |   ||||||||||||||||||| |||||||||||||||| || ||||| |||| |||||| |||||||    
T  36255357 aaaagttaaccaatgcctaaacaggacaatggattcgacacccccatctaatcatcaaacacaaaaaca 36255425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 33019002 - 33018919
Alignment:
Q  120 taaaaaattacaacaagttgttaaccaatgcctaaacacgacaatgga-ttcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||  ||||| ||||||  |||||||||||| ||||||||    
T  33019002 taaataattacaagaagtggttaaccaatgcctaaacacgac-atggagctcgaccaccacaaatgatcaccaaacgtaaaaaca 33018919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 45416 - 45306
Alignment:
Q  88 cgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatc 187  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45416 cgaaaagactacttaaaacgatacaagcagtttaaaaaat-acaacaagttgtcaaccaatgcctaaacacgacaatggattcgacaaccacatctgatc 45318  T
Q  188 accaaacataaa 199  Q
    ||||||||||||    
T  45317 accaaacataaa 45306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 45166220 - 45166053
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    |||||||||||||||||||| |||||||  |||||| | |||||||| | || ||||||||||||||||||||| ||| |||||||| || || ||||||    
T  45166220 aaaaatggattatattaacattgctaaaatagccctttcagcacaaggtttaccgaaaaaactacttaaaacgaaacacgcagtttacaagat-acaaca 45166122  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  45166121 aaatgttaaccaatgcctaaacaggacaatggattcgacatccacatctgatcaccaaacacaaaaaca 45166053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 2317377 - 2317553
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaa 126  Q
    ||||||||||||||||||||||||||||| | | ||||| | ||  |||||||| |||| |||||| ||||||  ||| ||||||||||||| | || ||    
T  2317377 aacaaataaaaatggattatattaacactaccatagcagtcttcgcagcacaaggtgtaccgaaaagactactagaaaagatacaagcagttctcaagaa 2317476  T
Q  127 ttacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |||||| |||| | |||||||||||||||||||||||  || ||||| ||||||  |||||||||||||||||||||    
T  2317477 ttacaagaagtggctaaccaatgcctaaacacgacaagagactcgaccaccacaattgatcaccaaacataaaaaca 2317553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 42964797 - 42964690
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| | || |||||||||||||||||||||| |||||    
T  42964797 aacaaacaaaaatggattatattaacactgctaaagcagccccctcagcacaagatgtaccgaaaagaatatttaaaacgatacaagcagttta-aaaat 42964699  T
Q  128 tacaacaag 136  Q
    |||||||||    
T  42964698 tacaacaag 42964690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 39693950 - 39694116
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    ||||||||| ||||||||||||||| ||  |||||| | |||||||| |||| |||||||||||||||  |||| |||  ||||||| ||||| |||||     
T  39693950 aaaaatggaatatattaacactgcttaaatagccctttcagcacaaggtgtaccgaaaaaactacttagcacgaaacacacagtttacaaaat-acaacc 39694048  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaac 202  Q
    |   ||||  ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  39694049 aaaagttaggcaatgcctaaacaagacaatggattcgacatccacatctgatcaccaaacacaaaaac 39694116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 6344303 - 6344134
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaattacaac 133  Q
    ||||||||| |||||||||||||  | ||||  | ||  ||||||||||||| |||||| ||||||  ||| |||||||   | | ||| |||||||||     
T  6344303 aaaaatggaatatattaacactgtcatagcaatcttcacagcacaagatgtaccgaaaagactactataaaagatacaaattggtctaagaaattacaag 6344204  T
Q  134 aagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |||| |||| |||||||||||||||||||  ||  ||||| ||||||  |||||||||||| ||||||||    
T  6344203 aagtggttacccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaacgtaaaaaca 6344134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 13654 - 13496
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaattacaaca 134  Q
    |||||||||||||||||||||||| |||  |||||| | ||||||||||||| ||||||||||| | ||||||| || | ||||||| || |||||||||    
T  13654 aaaaatggattatattaacactgcaaaaatagccctttcagcacaagatgtaccgaaaaaactattaaaaacgagaccaacagtttacaagattacaaca 13555  T
Q  135 agttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaa 193  Q
    |  |||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  13554 aaatgttaaccaatgcctaaacaagacaatgaattcgacacccacatctgatcaccaaa 13496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 5688 - 5815
Alignment:
Q  28 aacaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaat 127  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||| |||||| ||||||||||||||| || |||||      
T  5688 aacaaacaaaaatggaatatattaacactgctaaagcagcccactcagcacaagatgtaccgaaaagactactaaaaacgatacaagcaattcaaaaa-- 5785  T
Q  128 tacaacaagttgttaaccaatgcctaaaca 157  Q
    ||||||||||||||||||||||||||||||    
T  5786 tacaacaagttgttaaccaatgcctaaaca 5815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 33820904 - 33821079
Alignment:
Q  29 acaaataaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaa-aat 127  Q
    ||||| ||||||| ||||||||||||| || | |||||  |||| |||||||| |||| |||||| ||||||  ||| ||||||| ||||| | || |||    
T  33820904 acaaacaaaaatgaattatattaacaccgccatagcagttctctcagcacaaggtgtaccgaaaagactactagaaaagatacaaacagttcacaagaat 33821003  T
Q  128 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
     |||| |||| ||||||||||||||||||||||||||| | || || ||||||  |||||||||||||||||||||    
T  33821004 gacaagaagtagttaaccaatgcctaaacacgacaatgaactcaaccaccacaaatgatcaccaaacataaaaaca 33821079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 28633917 - 28633747
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtttaaaaaa-ttacaac 133  Q
    |||||||||||||| ||||||||| | ||||  ||||| ||||||||||||| | | || | ||||  ||| ||||||||||||| |  | | ||||||     
T  28633917 aaaaatggattataataacactgccatagcaatcctctcagcacaagatgtaccaagaagaatactagaaaagatacaagcagttcaccagagttacaaa 28633818  T
Q  134 aa-gttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    || || ||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||    
T  28633817 aaagtggttaaccaatgcctaaacacgacaatggactcaaccaccacatgtgatcaccaaacataaaaaca 28633747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 15601801 - 15601970
Alignment:
Q  35 aaaaatggattatattaacactgctaaagcagccctcttagcacaagatgtatcgaaaaaactacttaaaacgatacaagcagtt-taaaaaattacaac 133  Q
    |||||| ||||||||||||||||| | ||||  | ||  ||||||||||||| |||||| ||||||  ||| ||||||||  ||| |||| ||||||||     
T  15601801 aaaaatagattatattaacactgccatagcaatcttcacagcacaagatgtaccgaaaagactactataaaagatacaagttgttctaaataattacaag 15601900  T
Q  134 aagttgttaaccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaaaaca 203  Q
    |||| ||||||||||||||||||||||||  ||  ||||| ||||||  ||| |||||||||||||||||    
T  15601901 aagtggttaaccaatgcctaaacacgacatggggctcgaccaccacaaatgaccaccaaacataaaaaca 15601970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 22147 - 22176
Alignment:
Q  128 tacaacaagttgttaaccaatgcctaaaca 157  Q
    ||||||||||||||||||||||||||||||    
T  22147 tacaacaagttgttaaccaatgcctaaaca 22176  T

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