View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_11 (Length: 529)

Name: NF17793_high_11
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_11
NF17793_high_11
[»] chr3 (1 HSPs)
chr3 (359-470)||(45903407-45903518)
[»] chr6 (5 HSPs)
chr6 (360-470)||(23594519-23594629)
chr6 (124-284)||(32739580-32739740)
chr6 (359-472)||(14277210-14277323)
chr6 (360-470)||(26377900-26378010)
chr6 (94-284)||(29133195-29133383)
[»] chr1 (9 HSPs)
chr1 (366-470)||(19595974-19596078)
chr1 (359-470)||(32495723-32495834)
chr1 (360-470)||(46336402-46336512)
chr1 (358-470)||(43997149-43997261)
chr1 (395-470)||(43632938-43633013)
chr1 (361-470)||(11692551-11692661)
chr1 (360-408)||(19887028-19887076)
chr1 (284-329)||(39647086-39647131)
chr1 (358-386)||(43632996-43633024)
[»] chr5 (3 HSPs)
chr5 (360-470)||(39305458-39305568)
chr5 (384-470)||(17540054-17540140)
chr5 (377-470)||(9625448-9625541)
[»] chr4 (6 HSPs)
chr4 (360-470)||(12240657-12240767)
chr4 (360-470)||(49620674-49620784)
chr4 (365-468)||(24851008-24851111)
chr4 (362-470)||(23666587-23666695)
chr4 (383-470)||(14625621-14625709)
chr4 (371-407)||(24850927-24850963)
[»] scaffold1603 (1 HSPs)
scaffold1603 (361-470)||(972-1081)
[»] chr8 (2 HSPs)
chr8 (358-470)||(13083588-13083700)
chr8 (358-470)||(41388868-41388981)
[»] chr7 (7 HSPs)
chr7 (360-470)||(41985336-41985446)
chr7 (360-451)||(19681049-19681140)
chr7 (360-470)||(4926101-4926211)
chr7 (384-470)||(14792361-14792447)
chr7 (365-470)||(7260257-7260362)
chr7 (360-467)||(1264952-1265060)
chr7 (360-414)||(1261986-1262040)
[»] chr2 (3 HSPs)
chr2 (360-470)||(38992799-38992909)
chr2 (358-418)||(26692003-26692063)
chr2 (360-445)||(26691907-26691990)
[»] scaffold0027 (1 HSPs)
scaffold0027 (358-468)||(21950-22055)
[»] scaffold0005 (1 HSPs)
scaffold0005 (383-470)||(191674-191762)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 359 - 470
Target Start/End: Complemental strand, 45903518 - 45903407
Alignment:
Q  359 cggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgga 458  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  45903518 cggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaga 45903419  T
Q  459 tttcaacaattt 470  Q
    ||||||||||||    
T  45903418 tttcaacaattt 45903407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 360 - 470
Target Start/End: Original strand, 23594519 - 23594629
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||    
T  23594519 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaaat 23594618  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  23594619 ttcaacaattt 23594629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 32739740 - 32739580
Alignment:
Q  124 gatttttacaagagactgtcggtttggagtaggaacgtacatttgtggtgcggaagagatgttcgtcaaggcaaaaactat-gagttttatagacaagtt 222  Q
    |||||||||||| ||||||||||||||| | |||| || |||||||| ||||||  ||||||||||| |||||||| |||| |||||||||||||||| |    
T  32739740 gatttttacaagtgactgtcggtttggaattggaatgtgcatttgtgttgcggacaagatgttcgtctaggcaaaa-ctattgagttttatagacaagct 32739642  T
Q  223 tgttcttctccaactcacttagtagctgaaaccatgtcgacgacgatggagtgtgtcaagct 284  Q
    ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32739641 tgtacttgtccaactcacttagtagctgaaaccatgtcgacaacgatggagtgtgtcaagct 32739580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 359 - 472
Target Start/End: Original strand, 14277210 - 14277323
Alignment:
Q  359 cggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgga 458  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||| |    
T  14277210 cggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccgtcaattcatgatctgacgattccaattcacagcacgaa 14277309  T
Q  459 tttcaacaatttaa 472  Q
    ||||||||||||||    
T  14277310 tttcaacaatttaa 14277323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 26378010 - 26377900
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  ||    
T  26378010 ggatcaggatttgttgttgtagcaaattcacacagtttgccgcagtagcaaatctcagtcatcaatccatgatctgacggttccaattcacagcacaaat 26377911  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  26377910 ttcaacaattt 26377900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 284
Target Start/End: Original strand, 29133195 - 29133383
Alignment:
Q  94 gggggaagtcaagtgcaacgttgatgctacgatttttacaagagactgtcggtttggagtaggaacgtacatttgtggtgcggaagagatgttcgtcaag 193  Q
    ||||||||| |||||||||||||| ||||   |||||| | | ||||||||| ||||| ||  || || ||||  || |||  | |||||||| ||  ||    
T  29133195 gggggaagtgaagtgcaacgttgacgctaaattttttaaatgtgactgtcggcttggaataataatgtgcattcatgttgccaaggagatgtttgttgag 29133294  T
Q  194 gcaaaaactatgagttttatagacaagtttgttcttctccaactcacttagtagctgaaaccatgtcgacgacgatggagtgtgtcaagct 284  Q
    |||||||||  |||||| |||||| || |||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  29133295 gcaaaaact--gagtttgatagacgagcttgttcttgtccaacttacttactagctgaaaccatgtcgacaacgatggagtgtgtcaagct 29133383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 366 - 470
Target Start/End: Original strand, 19595974 - 19596078
Alignment:
Q  366 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaac 465  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19595974 ggatttgctgttgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaac 19596073  T
Q  466 aattt 470  Q
    |||||    
T  19596074 aattt 19596078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 359 - 470
Target Start/End: Original strand, 32495723 - 32495834
Alignment:
Q  359 cggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgga 458  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |    
T  32495723 cggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacacaaa 32495822  T
Q  459 tttcaacaattt 470  Q
    |||||| |||||    
T  32495823 tttcaataattt 32495834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 46336512 - 46336402
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||    
T  46336512 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatttgacggttccaattcacagcacaaat 46336413  T
Q  460 ttcaacaattt 470  Q
    ||||| |||||    
T  46336412 ttcaataattt 46336402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 358 - 470
Target Start/End: Original strand, 43997149 - 43997261
Alignment:
Q  358 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgg 457  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||      
T  43997149 acggatctggatttgctgctgtagcaaattcacacagtttatcgcagttgcaaatctcagccatcaattcatgatctgacggtttcaattcacagcacat 43997248  T
Q  458 atttcaacaattt 470  Q
    |||||||||||||    
T  43997249 atttcaacaattt 43997261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 470
Target Start/End: Complemental strand, 43633013 - 43632938
Alignment:
Q  395 tttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 470  Q
    ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  43633013 tttgctgctgtagcaaatctcaaccatcaatccatgatctgacggttccaattcacagcacgaaattcaacaattt 43632938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 470
Target Start/End: Complemental strand, 11692661 - 11692551
Alignment:
Q  361 gatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctg-tcggttccaattcacagcacggat 459  Q
    ||||||||| ||||| |||||||||||||| |||||||| | ||||| ||||||||||||||||||||| | ||| ||| ||| ||||||||  || |||    
T  11692661 gatctggatatgctggtgtagcaaattcacgcagtttgctgtagtagaaaatctcagccatcaatccataacctgatcgtttcaaattcacaataccgat 11692562  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  11692561 ttcaacaattt 11692551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 19887076 - 19887028
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagc 408  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  19887076 ggatctggatttactgttgtagcaaattcacacagtttgccgcagtagc 19887028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 39647131 - 39647086
Alignment:
Q  284 tccgttttcatacttgttcttgttcatgcaagaccttccgctactt 329  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||    
T  39647131 tccgttttcaaacttgttcttgttcatgctagacctgccgctactt 39647086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 43633024 - 43632996
Alignment:
Q  358 acggatctggatttgctgctgtagcaaat 386  Q
    |||||||||||||||||||||||||||||    
T  43633024 acggatctggatttgctgctgtagcaaat 43632996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 360 - 470
Target Start/End: Original strand, 39305458 - 39305568
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||    
T  39305458 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaat 39305557  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  39305558 ttcaacaattt 39305568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 17540140 - 17540054
Alignment:
Q  384 aattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 470  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||    
T  17540140 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacagcacaaatttcaacaattt 17540054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 470
Target Start/End: Original strand, 9625448 - 9625541
Alignment:
Q  377 tgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 470  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  9625448 tgtagcaaattcacacagtttgtcgcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaattt 9625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 12240767 - 12240657
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||    
T  12240767 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcataaat 12240668  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  12240667 ttcaacaattt 12240657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 49620784 - 49620674
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||    
T  49620784 ggatcaggatttgttgctgtagcaaattcacatagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaat 49620685  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  49620684 ttcaacaattt 49620674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 24851111 - 24851008
Alignment:
Q  365 tggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaa 464  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  24851111 tggatttgctgctgtagcaaattcacacagttttccgcagtagtaaatctcatccatcaatccatgatctgacggttccaattcacaacacagatttcaa 24851012  T
Q  465 caat 468  Q
    ||||    
T  24851011 caat 24851008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 470
Target Start/End: Original strand, 23666587 - 23666695
Alignment:
Q  362 atctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggattt 461  Q
    |||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||| ||| | |||||||||||| || |||||||||    
T  23666587 atctggatttgctgctgtagcaaattcacacagtttgccgtaggagaaaatctcagtcatcaatccataatccgacggttccaattcgcaacacggattt 23666686  T
Q  462 caacaattt 470  Q
    |||||||||    
T  23666687 caacaattt 23666695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 470
Target Start/End: Complemental strand, 14625709 - 14625621
Alignment:
Q  383 aaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttcc-aattcacagcacggatttcaacaattt 470  Q
    |||| ||||||||||| ||||||| |||| | |  ||||||||| ||||||| || ||||| |||| ||| || |||||||||||||||    
T  14625709 aaatacacacagtttggcgcagtaacaaaacacgaccatcaatctatgatctatcagttccaaatttacaacatggatttcaacaattt 14625621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 24850927 - 24850963
Alignment:
Q  371 tgctgctgtagcaaattcacacagtttgccgcagtag 407  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  24850927 tgctgttgtagcaaattcacacagtttaccgcagtag 24850963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 361 - 470
Target Start/End: Complemental strand, 1081 - 972
Alignment:
Q  361 gatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatt 460  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  1081 gatctgaatttgctgctgtagcaaattcacacagtttgtcgcagtagcaaatctcaaccatcaattcatgatctgacggttccaattcacagcacggatt 982  T
Q  461 tcaacaattt 470  Q
    ||||||||||    
T  981 tcaacaattt 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 358 - 470
Target Start/End: Original strand, 13083588 - 13083700
Alignment:
Q  358 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgg 457  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  13083588 acggatctggatttactgttgtagcaaatttacacagtttgccgcagtagcaaatctcagcgatcaatccatgatctgatggttccaattcacagcacgg 13083687  T
Q  458 atttcaacaattt 470  Q
    |||||||||||||    
T  13083688 atttcaacaattt 13083700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 470
Target Start/End: Original strand, 41388868 - 41388981
Alignment:
Q  358 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttc-caattcacagcacg 456  Q
    ||||| ||| ||||| || |||||||||||||||| ||||| ||||||||||||||||  ||||||||  ||||| || ||||||  |||||||| | ||    
T  41388868 acggacctgaatttgatgttgtagcaaattcacacggtttgtcgcagtagcaaatctcgaccatcaatttatgatatgacggttctaaattcacatctcg 41388967  T
Q  457 gatttcaacaattt 470  Q
    ||||||||||||||    
T  41388968 gatttcaacaattt 41388981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 41985446 - 41985336
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  41985446 ggatctggatttgctgccgtagcaaattcacacaatttgtcgcagtagcaaatctcagccatcaatccatgatccgacggttccaattcacaacacggat 41985347  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  41985346 ttcaacaattt 41985336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 360 - 451
Target Start/End: Complemental strand, 19681140 - 19681049
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcaca 451  Q
    ||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19681140 ggatcaggatttaccgttgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcaca 19681049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 470
Target Start/End: Original strand, 4926101 - 4926211
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  |||||| |||||  |||||  ||    
T  4926101 ggatcaggatttgctgctgtagcaaattcacacagtttgctgctgtagcaaatctcagccatcaatccatgatctaacggttctaattcgtagcacaaat 4926200  T
Q  460 ttcaacaattt 470  Q
    |||||||||||    
T  4926201 ttcaacaattt 4926211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 14792361 - 14792447
Alignment:
Q  384 aattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 470  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||  |||||||||||||    
T  14792361 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacaacacaaatttcaacaattt 14792447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 365 - 470
Target Start/End: Original strand, 7260257 - 7260362
Alignment:
Q  365 tggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaa 464  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||  ||||| ||    
T  7260257 tggatttgctgctatagcaaattcacacagtttgccgcagtagtaaatctcagccatcaatctatgatctgactgtttcaatttacagcaaagattttaa 7260356  T
Q  465 caattt 470  Q
    ||||||    
T  7260357 caattt 7260362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 360 - 467
Target Start/End: Complemental strand, 1265060 - 1264952
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctg-tcggttccaattcacagcacgga 458  Q
    |||||||||||||||||||||||||||||| |||||||||   | ||| ||||||||||||||||| ||||||||| | | ||| |||||||||||| ||    
T  1265060 ggatctggatttgctgctgtagcaaattcaaacagtttgctataatagtaaatctcagccatcaattcatgatctgatggtttcaaattcacagcacaga 1264961  T
Q  459 tttcaacaa 467  Q
    ||| |||||    
T  1264960 ttttaacaa 1264952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 1261986 - 1262040
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatct 414  Q
    |||| |||||||| || |||| |||||||||||||||||||||||||||||||||    
T  1261986 ggatttggatttgttgttgtaccaaattcacacagtttgccgcagtagcaaatct 1262040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 38992909 - 38992799
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 459  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||| ||||| |||    
T  38992909 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgaaggttgcaattcaaagcacagat 38992810  T
Q  460 ttcaacaattt 470  Q
    ||||| |||||    
T  38992809 ttcaataattt 38992799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 26692063 - 26692003
Alignment:
Q  358 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagc 418  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26692063 acggatttggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagc 26692003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 26691907 - 26691990
Alignment:
Q  360 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaa 445  Q
    |||||||||||| ||||||||||||||||| |||||  ||||||||||||||| ||||||| ||||||||||| || ||| |||||    
T  26691907 ggatctggatttactgctgtagcaaattcaaacagt--gccgcagtagcaaatttcagccagcaatccatgatatgacgggtccaa 26691990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 22055 - 21950
Alignment:
Q  358 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgg 457  Q
    ||||||||||||||| || |||| |||||||||||||||||  ||||||||||||     |||||||||||||||||| |||||||||||||||  || |    
T  22055 acggatctggatttgttgttgtaacaaattcacacagtttgttgcagtagcaaat-----ccatcaatccatgatctgacggttccaattcacaatacag 21961  T
Q  458 atttcaacaat 468  Q
    |||| ||||||    
T  21960 attttaacaat 21950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 470
Target Start/End: Original strand, 191674 - 191762
Alignment:
Q  383 aaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttcc-aattcacagcacggatttcaacaattt 470  Q
    |||| ||||||||||| ||||||| |||| | |  ||||||||| ||||||| || ||||| |||| ||| || |||||||||||||||    
T  191674 aaatacacacagtttggcgcagtaacaaaacacgaccatcaatctatgatctatcagttccaaatttacaacatggatttcaacaattt 191762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University