View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_13 (Length: 520)
Name: NF17793_high_13
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Complemental strand, 52730245 - 52729758
Alignment:
| Q |
16 |
aatatacagtccagttccacctctaaacagcattattattaatggtggcagtgactcaatctcaatctcatcatcatcactgggattgggagatgcaaaa |
115 |
Q |
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| T |
52730245 |
aatatacagtccagttccacctctaaacagcattattattaatggtggcagtgagtcaatctcaatttcatcatcatcactgggattgggagatgcaaaa |
52730146 |
T |
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| Q |
116 |
ggaaaaaactggacccttggatgtttgtaccttataggacattgtttgtcatggtctggttggctggtgttgcaagcacctgtccttaagaagtatccgg |
215 |
Q |
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| T |
52730145 |
ggaaaaaactggacccttggatgtttgtaccttataggacattgtttgtcatggtctggttggctggtgttgcaagcacctgtccttaagaagtatccgg |
52730046 |
T |
|
| Q |
216 |
ctcgcctctctgtcacttcctatacatgtttctttggacttatccaatttctcattattgctttgatccttgaaagagatgctcaggcttggattttcca |
315 |
Q |
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| T |
52730045 |
ctcgcctctctgtcacttcctatacatgtttctttggacttatccaatttctcattattgctttgatccttgaaagagatgctcaggcttggattttcca |
52729946 |
T |
|
| Q |
316 |
atctggtggagaagtttttactattttgtacgcggttagtataaacaatttaatatgccatatgtcacgtaatttttatagtaaagatttgcggtgtttc |
415 |
Q |
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| T |
52729945 |
atctggtggagaagtttttactattttgtacgcggttagtataaacaatttaatatggcatatgtcacgtaatttttatagtaatgatttgcggtgtttc |
52729846 |
T |
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| Q |
416 |
tctttttacaaaatcaaacatgtgtccggaaatatattattttgcagtgtttgtttccgcatcaagtctttgatcaccgtatgtttat |
503 |
Q |
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| T |
52729845 |
tctttttacaaaatcaaacatgtgtccggaaatatattattttgcagtgtttgtttccgcatcaagtccttgatcaccgtatgtttat |
52729758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 107 - 355
Target Start/End: Complemental strand, 7368972 - 7368724
Alignment:
| Q |
107 |
gatgcaaaaggaaaaaactggacccttggatgtttgtaccttataggacattgtttgtcatggtctggttggctggtgttgcaagcacctgtccttaaga |
206 |
Q |
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||||| || |||||||| ||||| ||||||||| | || || || |||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7368972 |
gatgctaagggaaaaaattggacacttggatgtctttatctaattggacattgtttgtcttggtctgcttggcttgtgtttcaagcacctgtccttaaga |
7368873 |
T |
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| Q |
207 |
agtatccggctcgcctctctgtcacttcctatacatgtttctttggacttatccaatttctcattattgctttgatccttgaaagagatgctcaggcttg |
306 |
Q |
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| T |
7368872 |
agtaccctgctcgtctttctgtcacttcctatacatgtttctttggactcttgcaatttcttcttattgctttggtttttgaaagaaatgctcaggcttg |
7368773 |
T |
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| Q |
307 |
gattttccaatctggtggagaagtttttactattttgtacgcggttagt |
355 |
Q |
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| T |
7368772 |
gatttttcactctggtggtgaagctttcactattttatacgcggttagt |
7368724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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