View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_high_14 (Length: 515)
Name: NF17793_high_14
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Complemental strand, 37339741 - 37339261
Alignment:
| Q |
16 |
ataagacactaaaaaataatagcaatgggnnnnnnntatagttcattcataattcattcataaaaataagacgctaaaaatatagttcaggattcagggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37339741 |
ataagacactaaaaaataatagcaatggaaaaaaaatatagttcattcataattcattcataaaaataagacgctaaaaatatagttcaggattcagggt |
37339642 |
T |
|
| Q |
116 |
tcgtaaagatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37339641 |
tcgtaaagatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaat |
37339542 |
T |
|
| Q |
216 |
atcatttataggaaggcttaaatattttttccacttttccaaccaacttcgagagtctcgtatacttatcccatatgggaaacctagcttcaacacatgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37339541 |
atcatttataggaaggcttaaatattttttccacttttccaaccaacttcgagagtcttgtatacttatcccatatgggaaacctagcttcaacacaggt |
37339442 |
T |
|
| Q |
316 |
accnnnnnnnctatcttcaattgtgcttgcatctttaatataattgataaagtttcattttcacaaatctacaatgcaatttcttaaaaatatcgacctc |
415 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37339441 |
accaaaaaaactatcttcaattgtgcttgcatctttaatataattgataaagtttcattttcacaaatctgcaatgcaatttcttaaaaatatcgacctc |
37339342 |
T |
|
| Q |
416 |
ataagtcattaacttagttcatttttctcaactcatgcaacatttaatttttcgtgaaggtgtgtgtgtatatataagatgtg |
498 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37339341 |
ataaatcattaacttagttcatttttctcaactcatgcaacatttaatttttcgtgaag--gtgtgtgtatatataagatgtg |
37339261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 131 - 431
Target Start/End: Original strand, 11299217 - 11299518
Alignment:
| Q |
131 |
tgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaatatcatttataggaag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11299217 |
tgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatggctttttcaattggccaatggtttcaatatcatttataggaag |
11299316 |
T |
|
| Q |
231 |
gcttaaatattttttccacttttccaaccaacttcgagagtctcgtatacttatcccatatgggaaacctagcttcaacacatgtacc--nnnnnnncta |
328 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |
|
|
| T |
11299317 |
gctaaaata-tttttccacttttccaacccactttgagagtctcgtatacttatcccatatgggaaacctagcttcaatacaggtaccaaaaaaaaacta |
11299415 |
T |
|
| Q |
329 |
tcttcaattgtgcttgcatctttaatataattgataaagtttcattttcacaaatctacaatgcaatttcttaaaaatatcgacctcataagtcattaac |
428 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
11299416 |
tcttcatttatgcttgcacctttaatataattgataaaggttcattttcaaaaatctgcaatgcaatttcttaaaaatattgacctcataaatcattaac |
11299515 |
T |
|
| Q |
429 |
tta |
431 |
Q |
| |
|
||| |
|
|
| T |
11299516 |
tta |
11299518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 11299532 - 11299570
Alignment:
| Q |
428 |
cttagttcatttttctcaactcatgcaacatttaatttt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11299532 |
cttagttcatttttctcaactcatgcaacatttaatttt |
11299570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 115 - 498
Target Start/End: Original strand, 47966440 - 47966836
Alignment:
| Q |
115 |
ttcgtaaagatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaa |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
47966440 |
ttcgtaatgatctcaatgccatttaatcattccttcatattatcaaaaataataaataatcattcattcaatatctttttcaaatggacaatggtttcaa |
47966539 |
T |
|
| Q |
215 |
tatcatttataggaaggcttaaatattttttccacttttccaaccaacttcgagagtctcgtatacttatcccatatgggaaacctagcttcaacacatg |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
47966540 |
tatcatttataggaaggcttaaata-tttgtccacttttccaacccactttgagagtctcgtatacttatcccatatggg-aacctagcttcaacacaag |
47966637 |
T |
|
| Q |
315 |
taccnnnnnnnctatcttcaattgtgcttgcatctttaatataattgataaagtttcattttcacaaatctacaatgcaatttcttaaaaatatcgacct |
414 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
47966638 |
taccaaacaaactatcttcatttgtgcttgcacctttaatataattgataaaggttaattttcacaaatctgcaatgcaatttcttaaaattattgacct |
47966737 |
T |
|
| Q |
415 |
cataagtcattaa-----------------cttagttcatttttctcaactcatgcaacatttaatttttcgtgaaggtgtgtgtgtatatataagatgt |
497 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47966738 |
cataaatcattaacttataccaacattaagcttagttcatttttctcaactcatgcaacatttaatttttcgtgaag--gtgtgtgtatatataagatgt |
47966835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 33315256 - 33315173
Alignment:
| Q |
123 |
gatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaat |
206 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
33315256 |
gatctcaatgtcatttaattattcattcatattatcaataataataaataatcattctttcaataaatttttcaaatggacaat |
33315173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 15298101 - 15298033
Alignment:
| Q |
428 |
cttagttcatttttctcaactcatgcaacatttaatttttcgtgaaggtgtgtgtgtatatataagatgtg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
15298101 |
cttagttcatttttctcaactcatgcaacatttaatttttcgcgaaggtgt--gtgtatatataagatgtg |
15298033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 15298159 - 15298117
Alignment:
| Q |
387 |
caatgcaatttcttaaaaatatcgacctcataagtcattaact |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15298159 |
caatgcaatttcttaaaaatatcgaactcataaatcattaact |
15298117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University