View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_15 (Length: 513)

Name: NF17793_high_15
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_15
NF17793_high_15
[»] chr3 (2 HSPs)
chr3 (11-176)||(13219260-13219425)
chr3 (11-70)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (15-175)||(238285-238445)
scaffold0002 (15-82)||(240602-240669)
[»] chr8 (2 HSPs)
chr8 (212-345)||(29276066-29276199)
chr8 (177-221)||(9032725-9032769)
[»] chr4 (1 HSPs)
chr4 (11-106)||(18176963-18177058)
[»] chr5 (3 HSPs)
chr5 (11-70)||(39047942-39048001)
chr5 (177-221)||(26702828-26702872)
chr5 (177-221)||(26972561-26972605)
[»] chr7 (1 HSPs)
chr7 (14-102)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (11-70)||(15664-15723)
[»] scaffold0014 (2 HSPs)
scaffold0014 (177-243)||(82876-82942)
scaffold0014 (177-223)||(86994-87040)
[»] chr2 (1 HSPs)
chr2 (177-238)||(18738912-18738973)
[»] chr1 (1 HSPs)
chr1 (11-56)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 13219260 - 13219425
Alignment:
Q  11 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13219260 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttagaagca 13219359  T
Q  111 catattcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattca 176  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13219360 catattcctccggggggtagattgggccgtggacataagggtctttatgacacaatcaataattca 13219425  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 13217036 - 13217095
Alignment:
Q  11 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa 70  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13217036 acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaa 13217095  T

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Target: scaffold0002 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 238445 - 238285
Alignment:
Q  15 catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacata 114  Q
    |||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| |||||  |||||||||| ||||    
T  238445 catcatttagctattgcatttatttttctcattgccggtcacatgtatcgaactaacttcggaattgggcacagtattaaagatcttttagaagcgcata 238346  T
Q  115 ttcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattc 175  Q
     ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| |||||    
T  238345 ctcctccggggggtcgattagggcgtgggcataagggcctttatgacacaatcaacaattc 238285  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 240669 - 240602
Alignment:
Q  15 catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgg 82  Q
    ||||||||||||||||| |||||||| || || || |||||||||||||| || ||||  ||||||||    
T  240669 catcatttagctattgctattcttttcctaatcgcaggtcatatgtataggaccaactggggtattgg 240602  T

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Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 212 - 345
Target Start/End: Original strand, 29276066 - 29276199
Alignment:
Q  212 aattatacaacaatcttgaggattttaatttaattatttgttgaaacttgttagtcaatttatttgcagtcctgctagataaatggtaaaagaattgctt 311  Q
    |||| |||||||||||| ||||||||  |||||| |||||||||||  ||||| |||||||||||||| ||||||||||||||||| ||| ||||||||     
T  29276066 aattttacaacaatcttaaggattttcgtttaatcatttgttgaaatatgttactcaatttatttgcactcctgctagataaatgggaaaggaattgctc 29276165  T
Q  312 agcctgaaaatggtaacgagtcgtccgtgaagcc 345  Q
    | | ||||||||||||| || | |||||||||||    
T  29276166 aacgtgaaaatggtaaccagacatccgtgaagcc 29276199  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 9032725 - 9032769
Alignment:
Q  177 ctctttaatttcttatttgtgatgattccgcatttaattatacaa 221  Q
    ||||||||||||||||||||||| ||||| ||| ||||| |||||    
T  9032725 ctctttaatttcttatttgtgataattccacatctaattttacaa 9032769  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 18177058 - 18176963
Alignment:
Q  11 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttaga 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||||||| ||  |||||| ||| ||||||||    
T  18177058 acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga 18176963  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 39047942 - 39048001
Alignment:
Q  11 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa 70  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  39047942 acatcatcatttagctattgcaattctttttctcattaccggtcatatgtatagaactaa 39048001  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 26702872 - 26702828
Alignment:
Q  177 ctctttaatttcttatttgtgatgattccgcatttaattatacaa 221  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||    
T  26702872 ctctttaatttcttatttgtgataattccacatctaattatacaa 26702828  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 26972605 - 26972561
Alignment:
Q  177 ctctttaatttcttatttgtgatgattccgcatttaattatacaa 221  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||    
T  26972605 ctctttaatttcttatttgtgataattccacatctaattatacaa 26972561  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 14541411 - 14541323
Alignment:
Q  14 tcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattt 102  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||  | |||||| ||  |||||||||| ||||    
T  14541411 tcatcattttgctattgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatattt 14541323  T

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Target: scaffold0380 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 15664 - 15723
Alignment:
Q  11 acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa 70  Q
    |||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  15664 acatcatcatctagctattgcaattctttttcacattgccagtcatatgtatagaactaa 15723  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 82876 - 82942
Alignment:
Q  177 ctctttaatttcttatttgtgatgattccgcatttaattatacaacaatcttgaggattttaattta 243  Q
    |||||||||||||||| |||||| ||| | ||  |||||||||||||||||||||||||||||||||    
T  82876 ctctttaatttcttatctgtgataattgcacacctaattatacaacaatcttgaggattttaattta 82942  T

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Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 86994 - 87040
Alignment:
Q  177 ctctttaatttcttatttgtgatgattccgcatttaattatacaaca 223  Q
    ||||||||||||||||||||||| ||||| ||  |||||||||||||    
T  86994 ctctttaatttcttatttgtgataattccacacctaattatacaaca 87040  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 18738973 - 18738912
Alignment:
Q  177 ctctttaatttcttatttgtgatgattccgcatttaattatacaacaatcttgaggatttta 238  Q
    ||||||||||||||||||| ||| ||||| ||  |||||||||||||| | |||||||||||    
T  18738973 ctctttaatttcttatttgagataattccacacctaattatacaacaaccgtgaggatttta 18738912  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 39386263 - 39386308
Alignment:
Q  11 acatcatcatttagctattgcaattctttttctcattgctggtcat 56  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||    
T  39386263 acatcatcatttagctattgtaattctttttcgcattgccggtcat 39386308  T

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