View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_19 (Length: 485)
Name: NF17793_high_19
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 41686270 - 41686725
Alignment:
| Q |
11 |
cagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttgnnnnnnnn |
110 |
Q |
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| T |
41686270 |
cagagattgaaaatgcaccagttgtcactgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttgattattat |
41686369 |
T |
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| Q |
111 |
nnnnnnnnnggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagatttaatgatattttttgtaatatgtgaac |
210 |
Q |
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| T |
41686370 |
tattat---ggtattttctgttttcaaaattgtatacaagggaaactgattctattcctgcaatgtacagatttaatgatatttt-tgtaatatgtgaac |
41686465 |
T |
|
| Q |
211 |
tatattttgtttcgacattttagcgacatttgctgcttatgtttctgatgataagtaagttcaactgttttttctattgtttctgaaataaatacgaaga |
310 |
Q |
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| T |
41686466 |
tgtattttgtttcgacattttagcgacattttctgcttatgtttctgatgataagtaagttcaactgttttttctattgtttctgaaataaatacgaaga |
41686565 |
T |
|
| Q |
311 |
agtggtgatatatgaagcaatattcttgtcggtgctgctaaattttcatttcatcttcttattatcttgtgactgtctaatta-ttaggagctatgaact |
409 |
Q |
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| T |
41686566 |
agtggtgatatatgaagcaatattcttgtcggtgctgctaaattttcatttcatcttcttattatcccgtgactgtctaattatttaggagctatgaact |
41686665 |
T |
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| Q |
410 |
gatggaaaagattctcaaggtttatgtatacagagaaggagctaagccgataatgcattc |
469 |
Q |
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| T |
41686666 |
gatggaaaagattctcaaggtttatgtatacagagaaggagctaagccgataatgcattc |
41686725 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 51205887 - 51205978
Alignment:
| Q |
11 |
cagagattgaaaatgcaccagttgtcaatgatgttggaaacctttatactcccctttttcgcaacatttccatgtttaagaggtatcatttg |
102 |
Q |
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| T |
51205887 |
cagagattgaaaatgttccagttgtaactgatgttggaaatctttatgctcctctttttcacaatgtttccatgtttaagaggtatcatttg |
51205978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 51206851 - 51206931
Alignment:
| Q |
389 |
aattattaggagctatgaactgatggaaaagattctcaaggtttatgtatacagagaaggagctaagccgataatgcattc |
469 |
Q |
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| T |
51206851 |
aattattaggagctatgaattgatggaaaagactctcaaagtgtatgtatacagagaagggtcaaagccaataatgcattc |
51206931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 51206791 - 51206839
Alignment:
| Q |
315 |
gtgatatatgaagcaatattcttgtcggtgctgctaaattttcatttca |
363 |
Q |
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| T |
51206791 |
gtgagatatgaagcaatattcttggtggtactgctaaattttcatttca |
51206839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 53402 - 53459
Alignment:
| Q |
396 |
aggagctatgaactgatggaaaagattctcaaggtttatgtatacagagaaggagcta |
453 |
Q |
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| T |
53402 |
aggagctatgaattaatggaagagagactcaaagtgtatgtatacagagaaggagcta |
53459 |
T |
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