View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_21 (Length: 464)
Name: NF17793_high_21
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_21 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 40544425 - 40543993
Alignment:
| Q |
11 |
tccaagaatataaatgaaaatcattacaaataaagcctaacaagatatgataatcatcattaaacaaagattgactagcagctaaactggtgttaatcac |
110 |
Q |
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||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40544425 |
tccaacaagataaatgaaaaccattacaaataaagcctaacaagatatgataatcatcattaaacaaagattgactagtagctaaactggtgttgttcac |
40544326 |
T |
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| Q |
111 |
ccaacatctacggactaacaaccttgcttgcaatgacttccgcacacggtccatgacaacgaaaataagagaatccatagtctttatatctatccagtta |
210 |
Q |
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| T |
40544325 |
ccaacatctacggactaataaccttgcttgcaatgacttccgcacacggtccatgacaacgaaaataagagaatccacagtctttatatctatccagtta |
40544226 |
T |
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| Q |
211 |
cggatcaaattggctacggatgcaagctcagttcaactataagtggtctcgattatgtcaagattgaacccacgtttggaatagaattgaaacaaggagg |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
40544225 |
cggatcaaattggctacggatgcaagctcagttcgactataagtggtctcgattatgtcaagatttaacacacgtttggaatagaattgaaacaaggagg |
40544126 |
T |
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| Q |
311 |
agttgcacaagttggcattaatagcatcatgtgcatttgccttgtccttcttcccagacaacatccatctcatttggggcattttaacaaacatgtagag |
410 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40544125 |
agttgcacaagttggtattaacagcatcatgtgcatctgccctgtccttcttcccagacaacatccatctcatttggggcattttaacaaacatgtagag |
40544026 |
T |
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| Q |
411 |
tgcagctttaccattgacatcttggaagcacaa |
443 |
Q |
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| T |
40544025 |
tgcagctttaccattgacatcttggaagcacaa |
40543993 |
T |
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Target: scaffold0171 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 20561 - 20807
Alignment:
| Q |
11 |
tccaagaatataaatgaaaatcattacaaataaagcctaacaagatatgataatcatcattaaacaaagattgactagcagctaa-actggtgttaatca |
109 |
Q |
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| T |
20561 |
tccaacaagataaaagaaaaacattacaaataaagcctaacaagatatgataatcatcaataaacagcgaa--aatgtcagcgaacaacggttttgttca |
20658 |
T |
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| Q |
110 |
cccaacatctacggactaacaaccttgcttgcaatgacttccgcacacggtccatgacaacgaaaataagagaatccatagtctttatatctatccagtt |
209 |
Q |
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| T |
20659 |
cccaacatctacagactaacaaccttgcttgcaaagttttccgcacacggtccatgacagcgaaaatgagagaatccacaat-tttatatctatccagtt |
20757 |
T |
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| Q |
210 |
acggatcaaattggctacggatgcaagctcagttcaactataagtggtct |
259 |
Q |
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| T |
20758 |
agggatcatattggcaacggctgcaagctcagttcgactataagtggtct |
20807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 35407417 - 35407533
Alignment:
| Q |
155 |
cacggtccatgacaacgaaaataagagaatccatagtctttatatctatccagttacggatcaaattggctacggatgcaagctcagttcaactataagt |
254 |
Q |
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|||| |||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||| | ||| |||| |||| |
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| T |
35407417 |
cacgatccatgacaacgaagaaaagagaatccacagtctttttatctatccagttacggatcaaattggctactgctgcaagcacgtttcgactacaagt |
35407516 |
T |
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| Q |
255 |
ggtctcgattatgtcaa |
271 |
Q |
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| T |
35407517 |
ggtctcaataatgtcaa |
35407533 |
T |
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