View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_25 (Length: 438)
Name: NF17793_high_25
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 39374030 - 39373619
Alignment:
| Q |
14 |
aaataagattagaaattattgcttgttttagtagtattttaaaactgtggactgtggtcatcaaaagatctacataatggaacagtgaatatagttgttt |
113 |
Q |
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| T |
39374030 |
aaataagattagaaattattgcttgttttagtagtattttaaaactgtggactgtggtcatcaaaagatctacataatggaacagtgaatatagttgttt |
39373931 |
T |
|
| Q |
114 |
aatactttctgtattgttgatat---attgaacagaaatcaattatggtatattaagcttcaactgcatttgccttaatcgcaaaattatcaaagtttag |
210 |
Q |
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| T |
39373930 |
aatactttctgtattgttgatattgcagataacagaaatcaattatggtacattaagcttcaactgcagttgccttaatcggaaaattatcaaagtttag |
39373831 |
T |
|
| Q |
211 |
attgcaaattaaatttagtaatcaaaacagacacaccttttagagttctttataattggcatactttagtttaccatatatgttcaaacatgatgcagta |
310 |
Q |
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| T |
39373830 |
attgcaaattaaatttagtaatcaaaacagacacaccttttagagttctttataattggcatactttagtttaccatatatgtcgaaacatgatgcagta |
39373731 |
T |
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| Q |
311 |
cagaaactgttgggtacataaatgtcagcttcactgtctcgtttaacatacacaaataaacaaatttatgtagtgtttgatttcttatcggtagctccgt |
410 |
Q |
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| T |
39373730 |
cagaaactgttgggtacataaatgtcagcttcactgtctcgtttagcatacacaaataaacaaatttatgtagtgtttgatttcttatcggtagctccat |
39373631 |
T |
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| Q |
411 |
acatgcggatac |
422 |
Q |
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| T |
39373630 |
acatgcggatac |
39373619 |
T |
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