View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_26 (Length: 435)
Name: NF17793_high_26
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 7713861 - 7713462
Alignment:
| Q |
21 |
cgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttccagcagagtttggcgacctcccttatcttagcatgctctcattagccg |
120 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7713861 |
cgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcattggccg |
7713762 |
T |
|
| Q |
121 |
aaatgccgaaagttaaagggcaaatccctaactctttcagcaaactccaaagactcgaacatctcgaccttggctccaacagccttagtgggccaatccc |
220 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7713761 |
aaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtgggccaatccc |
7713662 |
T |
|
| Q |
221 |
tgcttttctgggcaagttgaagcgcctccaagaggttgatttgtctaacaacaagttatccggtgctattccggcgtcgctcggcaacctacagtctctt |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7713661 |
tgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacagtctctt |
7713562 |
T |
|
| Q |
321 |
tcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctctgtg |
420 |
Q |
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||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7713561 |
tcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtg |
7713462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 7699516 - 7699117
Alignment:
| Q |
21 |
cgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttccagcagagtttggcgacctcccttatcttagcatgctctcattagccg |
120 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
7699516 |
cgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcattggccg |
7699417 |
T |
|
| Q |
121 |
aaatgccgaaagttaaagggcaaatccctaactctttcagcaaactccaaagactcgaacatctcgaccttggctccaacagccttagtgggccaatccc |
220 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||| ||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||| |
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| T |
7699416 |
aaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatccc |
7699317 |
T |
|
| Q |
221 |
tgcttttctgggcaagttgaagcgcctccaagaggttgatttgtctaacaacaagttatccggtgctattccggcgtcgctcggcaacctacagtctctt |
320 |
Q |
| |
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| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |
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| T |
7699316 |
ctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatccggcactattccggcgtcactcggcaacctacaatctctt |
7699217 |
T |
|
| Q |
321 |
tcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctctgtg |
420 |
Q |
| |
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||| |||| ||||| |||||||||||||| |||||||| || ||| ||||||||| |||||| |||| | ||||||||||||||||||||| |||| |
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| T |
7699216 |
tcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggttgaagaagtttaacaagaatgtgtttgagcataataaatgcctttgtg |
7699117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 420
Target Start/End: Complemental strand, 7731534 - 7731139
Alignment:
| Q |
25 |
tcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttccagcagagtttggcgacctcccttatcttagcatgctctcattagccgaaat |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
7731534 |
tcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaat |
7731435 |
T |
|
| Q |
125 |
gccgaaagttaaagggcaaatccctaactctttcagcaaactccaaagactcgaacatctcgaccttggctccaacagccttagtgggccaatccctgct |
224 |
Q |
| |
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||||||||| | |||| ||||||||||||||| ||||||||| ||||||| || | || |||||||| |||||||| ||||||||||| ||||| || |
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| T |
7731434 |
gccgaaagtaactgggccaatccctaactcttttagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccact |
7731335 |
T |
|
| Q |
225 |
tttctgggcaagttgaagcgcctccaagaggttgatttgtctaacaacaagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcga |
324 |
Q |
| |
|
||||| ||| |||||||| || | || ||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||| | ||| |||||||||| |
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| T |
7731334 |
tttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccggcgtcgttcggctccataccgtctctttcgc |
7731235 |
T |
|
| Q |
325 |
agttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctctgtg |
420 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
7731234 |
agtttaatgtcagctttaaccaactgtgtggtgctatccctactggattgagcaagtttgcaaagagttcgtttgatcataataaatgcctttgtg |
7731139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 25 - 420
Target Start/End: Complemental strand, 7727374 - 7726979
Alignment:
| Q |
25 |
tcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttccagcagagtttggcgacctcccttatcttagcatgctctcattagccgaaat |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | | |||||||| || ||||| |
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| T |
7727374 |
tcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaat |
7727275 |
T |
|
| Q |
125 |
gccgaaagttaaagggcaaatccctaactctttcagcaaactccaaagactcgaacatctcgaccttggctccaacagccttagtgggccaatccctgct |
224 |
Q |
| |
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||| ||||| | || | ||||||||||||||||||||||||| ||||||| || | || |||||||| |||||||| ||||||||||| ||||| || |
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| T |
7727274 |
gcccaaagtaaccggaccaatccctaactctttcagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccact |
7727175 |
T |
|
| Q |
225 |
tttctgggcaagttgaagcgcctccaagaggttgatttgtctaacaacaagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcga |
324 |
Q |
| |
|
||||| ||| |||||||| || | || ||| ||||||||||||||||| |||||||||||| |||||| |||||| ||||| | ||| |||||||||| |
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|
| T |
7727174 |
tttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgc |
7727075 |
T |
|
| Q |
325 |
agttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctctgtg |
420 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
7727074 |
agtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctttgtg |
7726979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 420
Target Start/End: Complemental strand, 7739692 - 7739297
Alignment:
| Q |
25 |
tcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttccagcagagtttggcgacctcccttatcttagcatgctctcattagccgaaat |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||| | | |||||||| |||||||| |
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|
| T |
7739692 |
tcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaat |
7739593 |
T |
|
| Q |
125 |
gccgaaagttaaagggcaaatccctaactctttcagcaaactccaaagactcgaacatctcgaccttggctccaacagccttagtgggccaatccctgct |
224 |
Q |
| |
|
||| ||||| | |||| ||| ||||||||||||||||||||||||||||| || | ||||||||||| |||||||| ||||||||| | ||||| || |
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|
| T |
7739592 |
gcccaaagtaactgggccaattcctaactctttcagcaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccact |
7739493 |
T |
|
| Q |
225 |
tttctgggcaagttgaagcgcctccaagaggttgatttgtctaacaacaagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcga |
324 |
Q |
| |
|
|| || ||| |||||||| || | || ||| |||||||||||||||| |||||| |||||| ||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
7739492 |
ttcctaggccagttgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttccc |
7739393 |
T |
|
| Q |
325 |
agttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctctgtg |
420 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
7739392 |
agtttaacgtcagctttaaccaactgtgtggtgctatccctactggattgagcaaatttgcaaagagttcgtttgatcataataaatgcctttgtg |
7739297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 138 - 420
Target Start/End: Original strand, 12908075 - 12908357
Alignment:
| Q |
138 |
gggcaaatccctaactctttcagcaaactccaaagact-cgaacatctcgaccttggctccaacagccttagtgggccaatccctgcttttctgggcaag |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| | | |||| ||| | ||| |||||||| ||||||||| || ||||| | || || ||| | |
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| T |
12908075 |
gggccaatccctaactctttcagcaaactcaaaaaattgcgaagc-ctcaaacttaactccaacaaccttagtggcccgatccccaccttcctaggccgg |
12908173 |
T |
|
| Q |
237 |
ttgaagcgcctccaagaggttgatttgtctaacaacaagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtca |
336 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||| |||||| || |||| ||||| | |
|
|
| T |
12908174 |
ttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaatgtta |
12908273 |
T |
|
| Q |
337 |
gctttaaccagctgtgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctctgtg |
420 |
Q |
| |
|
||| |||||| |||||||||||||| ||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||| |
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| T |
12908274 |
gctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtatgtttgagcataataaatgcctttgtg |
12908357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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