View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_27 (Length: 432)
Name: NF17793_high_27
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 18866679 - 18867076
Alignment:
| Q |
14 |
ttatactccatttatatgtggaaaagtagggattatagggtttgaaactacgtccctatttattattgtcattgcagctgccaacagagttgtactcagg |
113 |
Q |
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| T |
18866679 |
ttatgctccatttatgtgtggaaaagtagggattatagggttcgaaaccccgtccctacttattattgtcattgcagctgccaacagagttgtactcggg |
18866778 |
T |
|
| Q |
114 |
acaatctcaactccaattgatttttatttttggaataataatatagatgattttattaataggaaggagcttattacgttttgagagaaa-aattaataa |
212 |
Q |
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| T |
18866779 |
acaatctcaactccgattgttttttatttttggaataataatatagatgattttattaatagaaaggagcttattacgttttgagagaaataattaataa |
18866878 |
T |
|
| Q |
213 |
ttaaatttggtgaacnnnnnnngcataatgaaaatagaggcagagagaagaaatagaattgaaaggagaggataaagacattttgacaacaaagtaggat |
312 |
Q |
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| T |
18866879 |
ttaaatttggtgaacaaaaaaagcataatgaaaatagaggcagagagaagaaatagaattgaaaggagaggataaagacattttgacaaccaagtaggat |
18866978 |
T |
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| Q |
313 |
ccgaatacagcggtctctgtgttgggttgggtgtggtgtagttgtgttttgaaaatctccttttatctccttctctctctctatctattttctaacccct |
412 |
Q |
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| T |
18866979 |
ccgaatacagcggtctctgtgttgggttgggtgtggtgtagttatgttttgaaaatctccttttatctcct--tctctctctatctattttctaacccct |
18867076 |
T |
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