View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_high_30 (Length: 424)
Name: NF17793_high_30
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 26064403 - 26064809
Alignment:
| Q |
1 |
tttgagccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26064403 |
tttgagccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattca |
26064502 |
T |
|
| Q |
101 |
cgtgaataattaccggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || |
|
|
| T |
26064503 |
cgtgaataattaccggtttcaatttactgagtttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtacatatccatagtcct |
26064602 |
T |
|
| Q |
201 |
tttagcagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26064603 |
tttagcagcatgaagcccgtcataaccaggatgcgatggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgcc |
26064702 |
T |
|
| Q |
301 |
gccacacgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcctagttgtatgaactattcgagacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26064703 |
gccacacgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcctagttgtatgaactattcgagacc |
26064802 |
T |
|
| Q |
401 |
aacccat |
407 |
Q |
| |
|
||||||| |
|
|
| T |
26064803 |
aacccat |
26064809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 407
Target Start/End: Original strand, 26126352 - 26126753
Alignment:
| Q |
6 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26126352 |
gccatccgagaaaggtttgagagcatcttggttcccattaacatagtattcaacaactgctttcattcgcggaagcttatcagggtggtaattcaagtga |
26126451 |
T |
|
| Q |
106 |
ataattaccggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttcttttag |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
26126452 |
ataattaccggtttcaatttactgagtttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaagatatatatccatagttcttttag |
26126551 |
T |
|
| Q |
206 |
cagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| || ||||| | ||| ||||| |
|
|
| T |
26126552 |
cagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccac |
26126651 |
T |
|
| Q |
306 |
acgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcctagttgtatgaactattcgagaccaaccc |
405 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
26126652 |
acggtccaaaagctcaattgaaggaatggttggtctgatatagaagaaaccagaattgtaaacccatatcctagttgtatgaacgatacgagaccaaccc |
26126751 |
T |
|
| Q |
406 |
at |
407 |
Q |
| |
|
|| |
|
|
| T |
26126752 |
at |
26126753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 26096408 - 26096779
Alignment:
| Q |
6 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
105 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
26096408 |
gccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtga |
26096507 |
T |
|
| Q |
106 |
ataattaccggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttcttttag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||| || | ||||||||||||||||| |
|
|
| T |
26096508 |
ataattaccggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgctgttcataaaaagatatatatccatagttcttttag |
26096607 |
T |
|
| Q |
206 |
cagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| | ||| ||||| |
|
|
| T |
26096608 |
aagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcgaaagtcgtgctgccac |
26096707 |
T |
|
| Q |
306 |
acgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcct |
377 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
26096708 |
acggtccaaaagctcaattgaaggaatggttggtctgatatagaagaaaccacaattgtaaacaaatatcct |
26096779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 377
Target Start/End: Original strand, 26035757 - 26036131
Alignment:
| Q |
3 |
tgagccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacg |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26035757 |
tgagccatcagagaaaggtttgagagcatcttgtttcccattgacataatattcgacaactgctttcattcgcggaagcttatcagggtggtaattcacg |
26035856 |
T |
|
| Q |
103 |
tgaataattaccggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttcttt |
202 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || || | ||||||||||||| |
|
|
| T |
26035857 |
tgaacaattactggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttgctgttcataaagagatacatatccatagttcttc |
26035956 |
T |
|
| Q |
203 |
tagcagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgc |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
26035957 |
tagcagcatgaagcccttcataaccagggtgtgacggataaaatagttcctcgttgaaaacggcttggtcccatgcaacctccttggaaagccgtgtcgc |
26036056 |
T |
|
| Q |
303 |
cacacgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcct |
377 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
26036057 |
gacacggtccaaaagctcaattgaaggaatggttggtctgatatagaagaaaccggaattgtaaacccatatcct |
26036131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 26084133 - 26084504
Alignment:
| Q |
6 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
105 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26084133 |
gccatcgggaaaaggtttgagagcatcttggttcccattaacatagtattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtga |
26084232 |
T |
|
| Q |
106 |
ataattaccggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttcttttag |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||| || | ||||||||||||||||| |
|
|
| T |
26084233 |
ataataaccggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgctgttcataaaaagatatatatccatagttcttttag |
26084332 |
T |
|
| Q |
206 |
cagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||| || |||| ||||| | ||| ||||| |
|
|
| T |
26084333 |
cagcatgaagcccgtcataaccaggatgtgatggatgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccac |
26084432 |
T |
|
| Q |
306 |
acgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcct |
377 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
26084433 |
acggtccaaaagctcaattgaaggaatggttggtctgatatagaagaaaccagaattgtaaacaaatatcct |
26084504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 26119695 - 26120066
Alignment:
| Q |
6 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
105 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
26119695 |
gccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcgtaagcttatcacggtggtaattcaagtga |
26119794 |
T |
|
| Q |
106 |
ataattaccggtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttcttttag |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| || | ||||||||||||||||| |
|
|
| T |
26119795 |
ataataaccggtttcaatttactgaggttagcattgttcctcactgtcttgaaaagaactctgctattcataaaaagatatatatccatagttcttttag |
26119894 |
T |
|
| Q |
206 |
cagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccac |
305 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||| |||||||||||||||||||||| |||| | ||| ||||| |
|
|
| T |
26119895 |
cagcatgaagcccgtcataaccaggatatgatggatgaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcaaaagtcgtgctgccac |
26119994 |
T |
|
| Q |
306 |
acgatccaaaagctcaattgaaggaatggttggtctaatatagaagaaaccagaattgtaaacccatatcct |
377 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
26119995 |
acggtccaaaagctcaattgaaggaatggttggtctgatatagaagaaaccagcattgtaaacaaatatcct |
26120066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 26075539 - 26075686
Alignment:
| Q |
6 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
105 |
Q |
| |
|
|||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
26075539 |
gccatcgggaaaaggtttcagagcatcttagttcccattaacataatattcaacaactgctttcattcgccgaagcttatcacggtggtaattcaagtga |
26075638 |
T |
|
| Q |
106 |
ataattaccggtttcaatttactgaggttagcatcgttcctcactgtc |
153 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26075639 |
ataataaccggtttcaatttactgaggttagcatcgttcctcactgtc |
26075686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 128 - 374
Target Start/End: Original strand, 6773203 - 6773449
Alignment:
| Q |
128 |
tgaggttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtaaacatccatagttcttttagcagcatgaagcccgtcataacc |
227 |
Q |
| |
|
|||| |||||||| || ||||| ||||| || ||||| ||||| |||||||||||||| | |||||| ||||| || ||||||||||| || |||||||| |
|
|
| T |
6773203 |
tgagcttagcatcttttctcacagtcttaaacagaaccttactgttcataaaaaggtacatatccattgttctctttgcagcatgaagtccatcataacc |
6773302 |
T |
|
| Q |
228 |
aggatgcgacggataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccacacgatccaaaagctcaattgaa |
327 |
Q |
| |
|
|||||| || || ||||| ||||| || |||||||| ||||| |||||||||||||| || ||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
6773303 |
aggatgtgaagggtaaaaaagttcttcattaaaaactgcttgatcccatgctttctctttagaaagccggtccgcaacgcgatccaaaagctcaattgaa |
6773402 |
T |
|
| Q |
328 |
ggaatggttggtctaatatagaagaaaccagaattgtaaacccatat |
374 |
Q |
| |
|
|||| |||||||| || || || || ||||| || |||||||||| |
|
|
| T |
6773403 |
ggaagtgttggtcttatgtaaaaaaagccagagttaaaaacccatat |
6773449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University