View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_31 (Length: 414)

Name: NF17793_high_31
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_31
NF17793_high_31
[»] chr4 (5 HSPs)
chr4 (26-395)||(48911732-48912101)
chr4 (22-146)||(48962710-48962834)
chr4 (25-130)||(48958566-48958671)
chr4 (22-164)||(48965745-48965887)
chr4 (26-99)||(48951654-48951727)
[»] scaffold0536 (4 HSPs)
scaffold0536 (19-393)||(5900-6274)
scaffold0536 (25-382)||(9895-10252)
scaffold0536 (293-381)||(860-948)
scaffold0536 (22-83)||(1164-1225)
[»] chr6 (1 HSPs)
chr6 (22-164)||(12589787-12589929)
[»] chr5 (2 HSPs)
chr5 (22-143)||(28385750-28385871)
chr5 (22-143)||(12541101-12541222)
[»] chr2 (3 HSPs)
chr2 (22-131)||(13440616-13440725)
chr2 (25-130)||(13448782-13448887)
chr2 (29-130)||(13455257-13455358)
[»] chr8 (1 HSPs)
chr8 (25-141)||(12641122-12641238)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 26 - 395
Target Start/End: Complemental strand, 48912101 - 48911732
Alignment:
Q  26 ttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaa 125  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912101 ttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaa 48912002  T
Q  126 gttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgctgcattcat 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48912001 gttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaataatttactcagctgcttcggtggtgctgcattcat 48911902  T
Q  226 ggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48911901 ggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaa 48911802  T
Q  326 ccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcag 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48911801 ccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcag 48911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 48962710 - 48962834
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 121  Q
    ||||||||||||||  | | |||||||||||||| ||||||| ||||||||||| |||||||  || ||||||||||||||||||||  |||||||||||    
T  48962710 tgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccg 48962809  T
Q  122 tcaagttcagcaaaattgttgacaa 146  Q
    ||||||||||| || ||||||||||    
T  48962810 tcaagttcagcgaagttgttgacaa 48962834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 48958566 - 48958671
Alignment:
Q  25 tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca 124  Q
    |||||||||||| |||  ||||||||||||||| ||||||||||||||| | |||||||  ||  |||||| ||||||||||||  |||||||||| |||    
T  48958566 tttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatca 48958665  T
Q  125 agttca 130  Q
    ||||||    
T  48958666 agttca 48958671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 48965745 - 48965887
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 121  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||||||||| || ||||  ||  |  || | || | ||  || |||||||| |||    
T  48965745 tgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctactcacataatatttaatgtactcttccccg 48965844  T
Q  122 tcaagttcagcaaaattgttgacaaggattccgttacttttga 164  Q
    ||||| ||||| ||||||||||||| || ||| ||||||||||    
T  48965845 tcaagctcagcgaaattgttgacaatgagtccattacttttga 48965887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 48951654 - 48951727
Alignment:
Q  26 ttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgta 99  Q
    ||||||||| ||||| |||||| |||||| || ||||||||||||||||| |||||||   | |||||||||||    
T  48951654 ttctcttgagtagttttgcgaacaagagaggccggaccaagatgccaagccttgtgaccgatggttttctcgta 48951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 6274 - 5900
Alignment:
Q  19 ctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttca 118  Q
    ||||||||| ||||||| |||| | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  6274 ctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttca 6175  T
Q  119 ccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgctg 218  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||| ||||| | |||||||||||| || | ||||| ||||||||| || ||||    
T  6174 ccgtcaagttcagaaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggagctg 6075  T
Q  219 cattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacag 318  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  6074 cattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaacag 5975  T
Q  319 agagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatc 393  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||    
T  5974 agagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatc 5900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 25 - 382
Target Start/End: Complemental strand, 10252 - 9895
Alignment:
Q  25 tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca 124  Q
    ||||||||||| |||| | |||| |||| ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||||| | || || |||||||    
T  10252 tttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttctgacccgtagttttcttgtagtgttcgatgtgctatttaccgtca 10153  T
Q  125 agttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgctgcattca 224  Q
    |||||  ||||||| ||||||||||| || | ||||||||||||  |||| | | || || |||| | || ||||| |||||| || |||| ||||||||    
T  10152 agttctacaaaattattgacaaggatcccttgacttttgaaaaccatctccaaacgctctcccaagatttcactcatctgcttaggcggtgttgcattca 10053  T
Q  225 tggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaa 324  Q
    || |||||||||||||||||  ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10052 tgacaatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaa 9953  T
Q  325 accgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaagga 382  Q
    |||||||||||  ||||| |||||||| ||||||||||||||||||| ||||||||||    
T  9952 accgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaagga 9895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 948 - 860
Alignment:
Q  293 gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaagg 381  Q
    |||||||||||||| || | ||| || |||||||||||||| |||| ||| ||||| || ||||||||||| || ||||  ||||||||    
T  948 gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagg 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 1225 - 1164
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgac 83  Q
    ||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||||| |||||||    
T  1225 tgctttctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgac 1164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 12589929 - 12589787
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 121  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||  || |||||||| ||||||| || | ||||||  ||     
T  12589929 tgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggcca 12589830  T
Q  122 tcaagttcagcaaaattgttgacaaggattccgttacttttga 164  Q
    ||||||||||| || ||||| |||| || ||| ||||||||||    
T  12589829 tcaagttcagcgaagttgttaacaatgagtccattacttttga 12589787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 28385750 - 28385871
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 121  Q
    |||||||||||||| |||| | |||||||  |||| |||||||||||||||||| |||||||  || |||||||||||||||| || | ||||||| ||     
T  28385750 tgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctcca 28385849  T
Q  122 tcaagttcagcaaaattgttga 143  Q
    ||||||||| |||| |||||||    
T  28385850 tcaagttcaacaaagttgttga 28385871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 12541101 - 12541222
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 121  Q
    |||||||||||||||  || |  |||||| ||||| |||||||||||||||||| |||||||  || |||||||||||||||| || | ||||||| ||     
T  12541101 tgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctcca 12541200  T
Q  122 tcaagttcagcaaaattgttga 143  Q
    ||||||||| |||| |||||||    
T  12541201 tcaagttcaacaaagttgttga 12541222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 13440616 - 13440725
Alignment:
Q  22 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 121  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||||| | |||||||  || |||||||| ||||||| |||  ||||||| |||    
T  13440616 tgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccg 13440715  T
Q  122 tcaagttcag 131  Q
    ||||||||||    
T  13440716 tcaagttcag 13440725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 13448782 - 13448887
Alignment:
Q  25 tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca 124  Q
    ||||||||||  |||| ||||||||||||||| |||||||||||||||| | |||||||  || | ||||||||||||||  ||  ||||||| || |||    
T  13448782 tttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatca 13448881  T
Q  125 agttca 130  Q
    ||||||    
T  13448882 agttca 13448887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 13455257 - 13455358
Alignment:
Q  29 tcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt 128  Q
    |||||||  ||| ||| ||||||||||| |||||||| ||||||| | |||||||  || ||||| |||||||||| |||  ||||||| || |||| ||    
T  13455257 tcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaatt 13455356  T
Q  129 ca 130  Q
    ||    
T  13455357 ca 13455358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 12641238 - 12641122
Alignment:
Q  25 tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca 124  Q
    |||||||| || |||| ||||||||||| ||| |||||||||||||||||| |||| ||   | |||||||| ||||||| |||  | |||||||| |||    
T  12641238 tttctcttcaaaagttttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatca 12641139  T
Q  125 agttcagcaaaattgtt 141  Q
    |||||| |||| |||||    
T  12641138 agttcaacaaagttgtt 12641122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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