View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_high_33 (Length: 409)
Name: NF17793_high_33
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_high_33 |
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| [»] scaffold0191 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 47 - 395
Target Start/End: Original strand, 19204 - 19554
Alignment:
| Q |
47 |
cttttctcttcaggagaagcaaccctttgtttctcatgctagagaattggacaataagcaccaagaagctttgaaataggatgctaatgggaccattaag |
146 |
Q |
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| T |
19204 |
cttttctcttcaggagaagcaaccctttgtttctcatgctagagaattggacaataagcaccaagaagctttgaaacacgatgctattgggatcattaag |
19303 |
T |
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| Q |
147 |
gtaatttcacaatgcaaatcttgatcttgtgttttagtatatgttgttattgaaaaatagattaaaagaaaacctgagttgctcctttttggtttaaaag |
246 |
Q |
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| T |
19304 |
gtaatttcacaatgcaaatcttgatcttgtgttttagtatatgttgttactgaaaaatagattaaaagaaaacctgagttgctcctttttggtttaaaag |
19403 |
T |
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| Q |
247 |
gaaatatgatattgctcctatcattgtagaaactgttacaagctttattagattcttttgaggagattctgtggaccgttatagaga--ttggttcaaac |
344 |
Q |
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| T |
19404 |
gaaatatgatattgctcctatcattgtagaaagtgttacaagctttattagattcttttgaggagattttgtggacctgtatagtgactgtggttcaaac |
19503 |
T |
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| Q |
345 |
acagtttgaaaaaactctgtttatgtgccttgcctcgtttcttatcctttg |
395 |
Q |
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| T |
19504 |
acagtttgaaaaaactctattgatgtgcctttcctcgtttcttatcctttg |
19554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 10430469 - 10430604
Alignment:
| Q |
51 |
tctcttcaggagaagcaaccctttgtttctcatgctagagaattggacaataagcaccaagaagctttgaaataggatgctaatgggaccattaaggtaa |
150 |
Q |
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| T |
10430469 |
tctcttcaggagaggcaaccatttgtttctcatgctagagaattggacaataaacaccaagatgctttgaaacaagaggcttatgagatcataaaggtaa |
10430568 |
T |
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| Q |
151 |
tttcacaatgcaaatcttgatcttgtgttttagtata |
187 |
Q |
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| T |
10430569 |
gttgaaaat-caaatgttgatcttgttttttaatata |
10430604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 35973 - 36044
Alignment:
| Q |
51 |
tctcttcaggagaagcaaccctttgtttctcatgctagagaattggacaataagcaccaagaagctttgaaa |
122 |
Q |
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| T |
35973 |
tctcttcaggagaggcaaccatttgtttctcatgctagagaattggacaataaacaccaagatgctttgaaa |
36044 |
T |
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