View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_high_43 (Length: 364)

Name: NF17793_high_43
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_high_43
NF17793_high_43
[»] chr4 (9 HSPs)
chr4 (10-343)||(46028514-46028847)
chr4 (10-343)||(46259727-46260058)
chr4 (148-291)||(46302659-46302810)
chr4 (170-247)||(46302627-46302703)
chr4 (152-227)||(46303086-46303160)
chr4 (149-241)||(46028449-46028539)
chr4 (149-241)||(46260033-46260123)
chr4 (11-66)||(46302602-46302657)
chr4 (251-293)||(46303096-46303138)
[»] chr1 (1 HSPs)
chr1 (20-63)||(3800062-3800105)
[»] chr2 (1 HSPs)
chr2 (296-334)||(38097508-38097546)
[»] chr8 (1 HSPs)
chr8 (182-237)||(4524499-4524554)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 46028514 - 46028847
Alignment:
Q  10 attattctaatctacttgaaccatatgattgtcgatttgcacgacaatcattttacacggggagccttcatagtagtagtcgatgttttcttccctttat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||    
T  46028514 attattctaatctacttgaaccatatgattgtcgatttgcacgacaatcattttacacggggagccttcatagtagtggtagatgttttctttcctttat 46028613  T
Q  110 ttgnnnnnnncttcccaatgcactcagcaggagaagctacttctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttgc 209  Q
    |||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46028614 ttgttttcttcttcccaatgcactcagcaggagaagctaattctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttgc 46028713  T
Q  210 atcccaattattctaatcttcttcaaccatatcactgttaataatcttctctaatataaattagattatgatttgcatcccaatcataagttttgtgttt 309  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46028714 atcccaattattctaatcttcttgaaccatatcactgttaataatcttctctaatataaactagattatgatttgcatcccaatcataagttttgtgttt 46028813  T
Q  310 gcaccggattagtcctttaagttttagaaatttt 343  Q
    ||||||||||||||||||||||||||||||||||    
T  46028814 gcaccggattagtcctttaagttttagaaatttt 46028847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 46260058 - 46259727
Alignment:
Q  10 attattctaatctacttgaaccatatgattgtcgatttgcacgacaatcattttacacggggagccttcatagtagtagtcgatgttttcttccctttat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  46260058 attattctaatctacttgaaccatatgattgtcgatttgcacgacaatcattttacacggggagccttcatagtagtagtagatgttttctttcctttat 46259959  T
Q  110 ttgnnnnnnn-cttcccaatgcactcagcaggagaagctacttctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttg 208  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46259958 ttgttttttttcttcccaatgcactcagcaggagaagctacttctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttg 46259859  T
Q  209 catcccaattattctaatcttcttcaaccatatcactgttaataatcttctctaatataaattagattatgatttgcatcccaatcataagttttgtgtt 308  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46259858 catcccaatcattctaatcttctttaaccatatcactgttaataatcttctctaatataaactagattatgatttgcatcccaatcataagttttgtgtt 46259759  T
Q  309 tgcaccggattagtcctttaagttttagaaatttt 343  Q
    || |||||||    | |||||||||||||||||||    
T  46259758 tgtaccggat---ccttttaagttttagaaatttt 46259727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 46302810 - 46302659
Alignment:
Q  148 acttctttatgcatgtttattatt-aataatcttctgtaatataa---actaagattatgatttgcatcccaattattctaatcttcttcaaccatatca 243  Q
    |||||||| ||||||||  ||||| ||||||||||||||||||||   |||| ||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  46302810 acttctttctgcatgttggttatttaataatcttctgtaatataataaacta-gattatgatttgcatcctaattattttaatcttctttaaccatatca 46302712  T
Q  244 -----ctgttaataatcttctctaatataaattagattatgatttgcatccca 291  Q
         |||||||||||||||| ||||||||| || |||||||||| |||||||    
T  46302711 tatcactgttaataatcttctgtaatataaactatattatgatttccatccca 46302659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 46302703 - 46302627
Alignment:
Q  170 ttaataatcttctgtaatataaactaagattatgatttgcatcccaattattctaatcttcttcaaccatatcactgt 247  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  46302703 ttaataatcttctgtaatataaactat-attatgatttccatcccagttattctaatcttcttgaaccatatcactgt 46302627  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 46303160 - 46303086
Alignment:
Q  152 ctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttgcatcccaattattctaatc 227  Q
    |||| ||||||||| || | | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  46303160 ctttctgcatgtttgttttcattaatcttctataatataaacta-gattatgatttgcatcccaattattctaatc 46303086  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 46028449 - 46028539
Alignment:
Q  149 cttctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttgcatcccaattattctaatcttcttcaaccatat 241  Q
    ||||||||||||||||| |||| | |||  ||||||||||||| ||| ||||||  |||||||||||||||||||||||| ||| ||||||||    
T  46028449 cttctttatgcatgtttgttatcactaagtttctgtaatataa-cta-gattatagtttgcatcccaattattctaatctacttgaaccatat 46028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 46260123 - 46260033
Alignment:
Q  149 cttctttatgcatgtttattattaataatcttctgtaatataaactaagattatgatttgcatcccaattattctaatcttcttcaaccatat 241  Q
    ||||||||||||||||| |||| | |||  ||||||||||||| ||| ||||||  |||||||||||||||||||||||| ||| ||||||||    
T  46260123 cttctttatgcatgtttgttatcactaagtttctgtaatataa-cta-gattatagtttgcatcccaattattctaatctacttgaaccatat 46260033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 46302657 - 46302602
Alignment:
Q  11 ttattctaatctacttgaaccatatgattgtcgatttgcacgacaatcattttaca 66  Q
    |||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||    
T  46302657 ttattctaatcttcttgaaccatatcactgtcgattttcacgacaatcattttaca 46302602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 46303138 - 46303096
Alignment:
Q  251 taatcttctctaatataaattagattatgatttgcatcccaat 293  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  46303138 taatcttctataatataaactagattatgatttgcatcccaat 46303096  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 3800105 - 3800062
Alignment:
Q  20 tctacttgaaccatatgattgtcgatttgcacgacaatcatttt 63  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  3800105 tctacttgaaccatatgattgttgatttgcacgacaatcttttt 3800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 38097508 - 38097546
Alignment:
Q  296 taagttttgtgtttgcaccggattagtcctttaagtttt 334  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  38097508 taagttttgtatttgaaccggattagtcctttaagtttt 38097546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 4524554 - 4524499
Alignment:
Q  182 tgtaatataaactaagattatgatttgcatc-ccaattattctaatcttcttcaacc 237  Q
    |||||||| ||||| |||||||||||||||| ||||||||||| |||||||| ||||    
T  4524554 tgtaatatgaacta-gattatgatttgcatctccaattattctgatcttcttgaacc 4524499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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